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A. Lomsadze

Nucleic Acids Research, Bioinform., Genome Research, Nature Biotechnology, Methods in molecular biology, Proceedings of the National Academy of Sciences of the United States of America, ACM International Conference on Bioinformatics, Computational Biology and Biomedicine Show more
13
Role
Title
Level Year L/R
🐜 NCBI prokaryotic genome annotation pipeline
10 auth. T. Tatusova, Michael DiCuccio, Azat Badretdin, V. Chetvernin, Eric P. Nawrocki, L. Zaslavsky, ... A. Lomsadze, K. Pruitt, M. Borodovsky, J. Ostell 		12 2016
12
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🐬 GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.
J. Besemer, A. Lomsadze, M. Borodovsky 		11 2001
11
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🐬 Ab initio gene identification in metagenomic sequences
Wenhan Zhu, A. Lomsadze, M. Borodovsky 		10 2010
10
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🐬 BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database
Tomáš Brůna, K. Hoff, A. Lomsadze, M. Stanke, M. Borodovsky 		10 2020
10
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🐬 BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS
K. Hoff, Simone Lange, A. Lomsadze, M. Borodovsky, M. Stanke 		9 2016
9
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🦁 Gene identification in novel eukaryotic genomes by self-training algorithm
A. Lomsadze, Vardges Ter-Hovhannisyan, Y. Chernoff, M. Borodovsky 		9 2005
9
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🐬 Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training.
Vardges Ter-Hovhannisyan, A. Lomsadze, Y. Chernoff, M. Borodovsky 		9 2008
9
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🦁 Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm
A. Lomsadze, P. Burns, M. Borodovsky 		8 2014
8
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🐜 Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
55 auth. G. A. Wu, S. Prochnik, J. Jenkins, J. Salse, U. Hellsten, Florent Murat, X. Perrier, M. Ruiz, S. Scalabrin, J. Terol, M. Takita, K. Labadie, J. Poulain, A. Couloux, K. Jabbari, ... F. Cattonaro, Cristian Del Fabbro, S. Pinosio, A. Zuccolo, Jarrod Chapman, J. Grimwood, F. Tadeo, L. H. Estornell, J. V. Muñoz-Sanz, Victoria Ibanez, Amparo Herrero-Ortega, P. Aleza, Julián Pérez-Pérez, D. Ramón, D. Brunel, F. Luro, Chunxian Chen, W. Farmerie, B. Desany, C. Kodira, M. Mohiuddin, T. Harkins, Karin M. Fredrikson, P. Burns, A. Lomsadze, M. Borodovsky, Giuseppe Reforgiato, J. Freitas-Astúa, F. Quétier, L. Navarro, M. Roose, P. Wincker, J. Schmutz, M. Morgante, M. A. Machado, M. Talón, O. Jaillon, P. Ollitrault, F. Gmitter, D. Rokhsar 		8 2014
8
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🐬 Whole-Genome Annotation with BRAKER.
K. Hoff, A. Lomsadze, M. Borodovsky, M. Stanke 		8 2019
8
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🐜 Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)
49 auth. J. Stajich, Sarah K. Wilke, D. Ahrén, C. Au, B. Birren, M. Borodovsky, C. Burns, Björn Canbäck, L. Casselton, C. K. Cheng, Jixin Deng, F. Dietrich, D. Fargo, M. Farman, A. Gathman, ... J. Goldberg, R. Guigó, P. J. Hoegger, J. Hooker, Ashleigh Huggins, T. James, T. Kamada, Sreedhar Kilaru, C. Kodira, U. Kües, D. Kupfer, Hoi-shan Kwan, A. Lomsadze, Weixi Li, W. Lilly, Li‐Jun Ma, A. Mackey, G. Manning, F. Martin, H. Muraguchi, D. Natvig, Heather J. Palmerini, M. Ramesh, Cathy J Rehmeyer, B. Roe, N. Shenoy, M. Stanke, Vardges Ter-Hovhannisyan, A. Tunlid, R. Velagapudi, T. Vision, Qiandong Zeng, M. Zolan, P. Pukkila 		8 2010
8
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🐬 Identification of protein coding regions in RNA transcripts
Shiyuyun Tang, A. Lomsadze, M. Borodovsky 		8 2014
8
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🐜 Complex history of admixture during citrus domestication revealed by genome analysis
55 auth. G. A. Wu, S. Prochnik, J. Jenkins, J. Salse, U. Hellsten, Florent Murat, X. Perrier, M. Ruiz, S. Scalabrin, J. Terol, M. Takita, K. Labadie, J. Poulain, A. Couloux, K. Jabbari, ... F. Cattonaro, C. D. Fabbro, S. Pinosio, A. Zuccolo, Jarrod Chapman, J. Grimwood, F. Tadeo, L. H. Estornell, Juan V. Mu oz-Sanz, Victoria Ibanez, Amparo Herrero-Ortega, P. Aleza, J. P. Pérez, D. Ramón, D. Brunel, F. Luro, Chunxian Chen, W. Farmerie, B. Desany, C. Kodira, M. Mohiuddin, T. Harkins, Karin M. Fredrikson, P. Burns, A. Lomsadze, M. Borodovsky, Giuseppe Reforgiato, J. Freitas-Astúa, F. Quétier, L. Navarro, M. Roose, P. Wincker, J. Schmutz, M. Morgante, M. Machado, M. Talón, O. Jaillon, P. Ollitrault, F. Gmitter, D. Rokhsar 		8 2014
8
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