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🐜
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A promoter-level mammalian expression atlas
264 auth.
The Fantom Consortium,
Riken Pmii,
Riken Clst,
A. Forrest,
H. Kawaji,
M. Rehli,
J. Baillie,
M. Hoon,
Vanja Haberle,
T. Lassmann,
I. Kulakovskiy,
M. Lizio,
M. Itoh,
R. Andersson,
C. Mungall,
...
T. Meehan,
S. Schmeier,
N. Bertin,
Mette Jørgensen,
Emmanuel Dimont,
E. Arner,
Christian Schmidl,
U. Schaefer,
Y. Medvedeva,
C. Plessy,
Morana Vitezic,
Jessica Severin,
C. Semple,
Y. Ishizu,
Robert S. Young,
Margherita Francescatto,
I. Alam,
D. Albanese,
G. Altschuler,
T. Arakawa,
J. Archer,
P. Arner,
M. Babina,
Sarah Rennie,
Piotr J. Balwierz,
A. Beckhouse,
S. Pradhan-Bhatt,
J. Blake,
A. Blumenthal,
B. Bodega,
A. Bonetti,
J. Briggs,
F. Brombacher,
A. M. Burroughs,
A. Califano,
C. Cannistraci,
D. Carbajo,
Yuxiang Chen,
M. Chierici,
Yari Ciani,
H. Clevers,
E. Dalla,
Carrie A. Davis,
M. Detmar,
A. Diehl,
T. Dohi,
F. Drabløs,
A. Edge,
M. Edinger,
K. Ekwall,
Mitsuhiro Endoh,
H. Enomoto,
M. Fagiolini,
L. Fairbairn,
Hai Fang,
M. Farach‐Carson,
G. Faulkner,
A. Favorov,
M. Fisher,
M. Frith,
Rie Fujita,
S. Fukuda,
Cesare Furlanello,
M. Furuno,
J. Furusawa,
T. Geijtenbeek,
Andrew P. Gibson,
T. Gingeras,
D. Goldowitz,
J. Gough,
S. Guhl,
R. Guler,
S. Gustincich,
Thomas J. Ha,
M. Hamaguchi,
Mitsuko Hara,
M. Harbers,
J. Harshbarger,
A. Hasegawa,
Y. Hasegawa,
Takehiro Hashimoto,
M. Herlyn,
Kelly J. Hitchens,
S. Sui,
Oliver M. Hofmann,
I. Hoof,
Fumi Hori,
L. Huminiecki,
K. Iida,
T. Ikawa,
B. Jankovic,
Hui Jia,
A. Joshi,
Giuseppe Jurman,
B. Kaczkowski,
C. Kai,
Kaoru Kaida,
Ai Kaiho,
K. Kajiyama,
M. Kanamori-Katayama,
A. Kasianov,
T. Kasukawa,
S. Katayama,
S. Kato,
Shuji Kawaguchi,
H. Kawamoto,
Y. Kawamura,
T. Kawashima,
J. Kempfle,
T. Kenna,
J. Kere,
L. Khachigian,
T. Kitamura,
S. Klinken,
A. Knox,
M. Kojima,
S. Kojima,
N. Kondo,
H. Koseki,
S. Koyasu,
S. Krampitz,
A. Kubosaki,
A. T. Kwon,
J. Laros,
Weonju Lee,
Andreas Lennartsson,
Kang Li,
B. Lilje,
L. Lipovich,
A. Mackay-Sim,
Ri-ichiroh Manabe,
J. Mar,
Benoit Marchand,
Anthony Mathelier,
Niklas Mejhert,
A. Meynert,
Y. Mizuno,
D. A. L. Morais,
Hiromasa Morikawa,
M. Morimoto,
K. Moro,
Efthymios Motakis,
H. Motohashi,
C. Mummery,
Mitsuyoshi Murata,
Sayaka Nagao-Sato,
Yutaka Nakachi,
F. Nakahara,
Toshiyuki Nakamura,
Yukio Nakamura,
K. Nakazato,
E. Nimwegen,
N. Ninomiya,
Hiromi Nishiyori,
Shohei Noma,
T. Nozaki,
S. Ogishima,
N. Ohkura,
H. Ohmiya,
H. Ohno,
M. Ohshima,
Mariko Okada,
Y. Okazaki,
V. Orlando,
D. Ovchinnikov,
A. Pain,
R. Passier,
M. Patrikakis,
H. Persson,
Silvano Piazza,
J. Prendergast,
O. Rackham,
Jordan A. Ramilowski,
M. Rashid,
T. Ravasi,
P. Rizzu,
M. Roncador,
Sugata Roy,
M. Rye,
Eri Saijyo,
A. Sajantila,
A. Saka,
S. Sakaguchi,
Mizuho Sakai,
Hiroki Sato,
Hironori Sato,
Suzana Savvi,
A. Saxena,
C. Schneider,
E. Schultes,
G. Schulze-Tanzil,
Anita Schwegmann,
T. Sengstag,
Guojun Sheng,
H. Shimoji,
Y. Shimoni,
Jay W. Shin,
Christophe Simon,
D. Sugiyama,
T. Sugiyama,
Masanori Suzuki,
Naoko Suzuki,
R. Swoboda,
P. Hoen,
M. Tagami,
N. Takahashi,
Jun Takai,
Hiroshi Tanaka,
Hideki Tatsukawa,
Zuotian Tatum,
Mark Thompson,
H. Toyoda,
Tetsuro Toyoda,
Eivind Valen,
M. Wetering,
L. Berg,
R. Verardo,
Dipti Vijayan,
I. Vorontsov,
W. Wasserman,
Shoko Watanabe,
C. Wells,
Louise N. Winteringham,
E. Wolvetang,
E. Wood,
Y. Yamaguchi,
Masayuki Yamamoto,
M. Yoneda,
Y. Yonekura,
Shigehiro Yoshida,
S. Zabierowski,
Peter G Zhang,
Xiaobei Zhao,
S. Zucchelli,
K. Summers,
Harukazu Suzuki,
C. Daub,
J. Kawai,
P. Heutink,
Winston A Hide,
T. Freeman,
B. Lenhard,
V. Bajic,
Martin S. Taylor,
V. Makeev,
A. Sandelin,
D. Hume,
Piero Carninci,
Y. Hayashizaki
|
10 |
2014 |
10
🐜
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Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
109 auth.
E. Arner,
C. Daub,
Kristoffer Vitting-Seerup,
R. Andersson,
B. Lilje,
F. Drabløs,
Andreas Lennartsson,
Michelle Rönnerblad,
Olga Hrydziuszko,
Morana Vitezic,
T. Freeman,
Ahmad M. N. Alhendi,
P. Arner,
R. Axton,
J. Baillie,
...
A. Beckhouse,
B. Bodega,
J. Briggs,
F. Brombacher,
M. Davis,
M. Detmar,
Anna Ehrlund,
Mitsuhiro Endoh,
A. Eslami,
M. Fagiolini,
L. Fairbairn,
G. Faulkner,
Carmelo Ferrai,
M. Fisher,
L. Forrester,
D. Goldowitz,
R. Guler,
Thomas J. Ha,
Mitsuko Hara,
M. Herlyn,
T. Ikawa,
C. Kai,
H. Kawamoto,
L. Khachigian,
S. Klinken,
S. Kojima,
H. Koseki,
Sarah Klein,
Niklas Mejhert,
K. Miyaguchi,
Y. Mizuno,
M. Morimoto,
Kelly J. Morris,
C. Mummery,
Yutaka Nakachi,
S. Ogishima,
M. Okada‐Hatakeyama,
Y. Okazaki,
V. Orlando,
D. Ovchinnikov,
R. Passier,
M. Patrikakis,
A. Pombo,
Xian-Yang Qin,
Sugata Roy,
Hiroki Sato,
Suzana Savvi,
A. Saxena,
Anita Schwegmann,
D. Sugiyama,
R. Swoboda,
Hiroshi Tanaka,
A. Tomoiu,
Louise N. Winteringham,
E. Wolvetang,
Chiyo Yanagi-Mizuochi,
M. Yoneda,
S. Zabierowski,
Peter G Zhang,
I. Abugessaisa,
N. Bertin,
A. Diehl,
S. Fukuda,
M. Furuno,
J. Harshbarger,
A. Hasegawa,
Fumi Hori,
Sachi Ishikawa-Kato,
Y. Ishizu,
M. Itoh,
T. Kawashima,
M. Kojima,
N. Kondo,
M. Lizio,
T. Meehan,
C. Mungall,
Mitsuyoshi Murata,
Hiromi Nishiyori-Sueki,
S. Şahin,
Sayaka Nagao-Sato,
Jessica Severin,
M. Hoon,
J. Kawai,
T. Kasukawa,
T. Lassmann,
Harukazu Suzuki,
H. Kawaji,
K. Summers,
C. Wells,
D. Hume,
A. Forrest,
A. Sandelin,
Piero Carninci,
Y. Hayashizaki
|
9 |
2015 |
9
🐜
|
|
🐜
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Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan
24 auth.
C. Plessy,
Nicolas Bertin,
Hazuki Takahashi,
Roberto Simone,
Md. Salimullah,
T. Lassmann,
Morana Vitezic,
Jessica Severin,
Signe Olivarius,
Dejan Lazarevic,
...
Nadine Hornig,
V. Orlando,
I. Bell,
Hui Gao,
Jacqueline Dumais,
P. Kapranov,
Huaien Wang,
Carrie A. Davis,
T. Gingeras,
J. Kawai,
C. Daub,
Y. Hayashizaki,
Stefano Gustincich,
P. Carninci
|
7 |
2010 |
7
🐜
|
|
🐜
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Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies
27 auth.
Mette Boyd,
Malte Thodberg,
Morana Vitezic,
Jette Bornholdt,
Kristoffer Vitting-Seerup,
Yun Chen,
M. Coskun,
Yuan Li,
B. Lo,
P. Klausen,
Pawel Jan Schweiger,
A. Pedersen,
N. Rapin,
K. Skovgaard,
K. Dahlgaard,
...
R. Andersson,
Thilde Terkelsen,
B. Lilje,
J. Troelsen,
A. Petersen,
K. Jensen,
I. Gögenur,
P. Thielsen,
J. Seidelin,
O. Nielsen,
J. Bjerrum,
A. Sandelin
|
6 |
2018 |
6
🐜
|
|
🐜
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Age-associated DNA methylation changes in immune genes, histone modifiers and chromatin remodeling factors within 5 years after birth in human blood leukocytes
15 auth.
N. Acevedo,
Lovisa E. Reinius,
Morana Vitezic,
V. Fortino,
C. Söderhäll,
H. Honkanen,
R. Veijola,
O. Simell,
J. Toppari,
J. Ilonen,
...
M. Knip,
A. Scheynius,
H. Hyöty,
Dario Greco,
J. Kere
|
6 |
2015 |
6
🐜
|
|
🐜
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Characterization of the human RFX transcription factor family by regulatory and target gene analysis
9 auth.
Debora Sugiaman-Trapman,
Morana Vitezic,
Eeva-Mari Jouhilahti,
Anthony Mathelier,
G. Lauter,
Sougat Misra,
...
C. Daub,
J. Kere,
P. Swoboda
|
6 |
2018 |
6
🐜
|
|
🐜
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RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE)
8 auth.
H. Ohmiya,
Morana Vitezic,
M. Frith,
M. Itoh,
Piero Carninci,
A. Forrest,
...
Y. Hayashizaki,
T. Lassmann
|
5 |
2014 |
5
🐜
|
|
🐜
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Molecular Networks of DYX1C1 Gene Show Connection to Neuronal Migration Genes and Cytoskeletal Proteins
11 auth.
K. Tammimies,
Morana Vitezic,
H. Matsson,
Sylvie Le Guyader,
T. Bürglin,
Tiina Öhman,
...
S. Strömblad,
C. Daub,
T. Nyman,
J. Kere,
I. Tapia-Páez
|
5 |
2013 |
5
🐜
|
|
🐜
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Regional differences in gene expression and promoter usage in aged human brains
14 auth.
L. Pardo,
P. Rizzu,
Margherita Francescatto,
Morana Vitezic,
G. Leday,
Javier Simon Sanchez,
Abdullah M. Khamis,
Hazuki Takahashi,
W. D. Berg,
Y. Medvedeva,
...
M. A. Wiel,
C. Daub,
Piero Carninci,
P. Heutink
|
5 |
2013 |
5
🐜
|
|
🐜
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On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase
18 auth.
Hans Ienasescu,
Kang Li,
R. Andersson,
Morana Vitezic,
Sarah Rennie,
Yun Chen,
Kristoffer Vitting-Seerup,
Emil Lagoni,
Mette Boyd,
Jette Bornholdt,
...
Michiel J. L. de Hoon,
H. Kawaji,
T. Lassmann,
The Fantom Consortium,
Y. Hayashizaki,
A. Forrest,
Piero Carninci,
A. Sandelin
|
5 |
2016 |
5
🐜
|
|
🐜
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Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo.
19 auth.
Jette Bornholdt,
A. Saber,
B. Lilje,
Mette Boyd,
Mette Jørgensen,
Yun Chen,
Morana Vitezic,
N. Jacobsen,
S. S. Poulsen,
T. Berthing,
...
Simon Bressendorff,
Kristoffer Vitting-Seerup,
R. Andersson,
K. Hougaard,
C. Yauk,
S. Halappanavar,
H. Wallin,
U. Vogel,
A. Sandelin
|
4 |
2017 |
4
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