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Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
109 auth.
E. Arner,
C. Daub,
Kristoffer Vitting-Seerup,
R. Andersson,
B. Lilje,
F. Drabløs,
Andreas Lennartsson,
Michelle Rönnerblad,
Olga Hrydziuszko,
Morana Vitezic,
T. Freeman,
Ahmad M. N. Alhendi,
P. Arner,
R. Axton,
J. Baillie,
...
A. Beckhouse,
B. Bodega,
J. Briggs,
F. Brombacher,
M. Davis,
M. Detmar,
Anna Ehrlund,
Mitsuhiro Endoh,
A. Eslami,
M. Fagiolini,
L. Fairbairn,
G. Faulkner,
Carmelo Ferrai,
M. Fisher,
L. Forrester,
D. Goldowitz,
R. Guler,
Thomas J. Ha,
Mitsuko Hara,
M. Herlyn,
T. Ikawa,
C. Kai,
H. Kawamoto,
L. Khachigian,
S. Klinken,
S. Kojima,
H. Koseki,
Sarah Klein,
Niklas Mejhert,
K. Miyaguchi,
Y. Mizuno,
M. Morimoto,
Kelly J. Morris,
C. Mummery,
Yutaka Nakachi,
S. Ogishima,
M. Okada‐Hatakeyama,
Y. Okazaki,
V. Orlando,
D. Ovchinnikov,
R. Passier,
M. Patrikakis,
A. Pombo,
Xian-Yang Qin,
Sugata Roy,
Hiroki Sato,
Suzana Savvi,
A. Saxena,
Anita Schwegmann,
D. Sugiyama,
R. Swoboda,
Hiroshi Tanaka,
A. Tomoiu,
Louise N. Winteringham,
E. Wolvetang,
Chiyo Yanagi-Mizuochi,
M. Yoneda,
S. Zabierowski,
Peter G Zhang,
I. Abugessaisa,
N. Bertin,
A. Diehl,
S. Fukuda,
M. Furuno,
J. Harshbarger,
A. Hasegawa,
Fumi Hori,
Sachi Ishikawa-Kato,
Y. Ishizu,
M. Itoh,
T. Kawashima,
M. Kojima,
N. Kondo,
M. Lizio,
T. Meehan,
C. Mungall,
Mitsuyoshi Murata,
Hiromi Nishiyori-Sueki,
S. Şahin,
Sayaka Nagao-Sato,
Jessica Severin,
M. Hoon,
J. Kawai,
T. Kasukawa,
T. Lassmann,
Harukazu Suzuki,
H. Kawaji,
K. Summers,
C. Wells,
D. Hume,
A. Forrest,
A. Sandelin,
Piero Carninci,
Y. Hayashizaki
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9 |
2015 |
9
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Detecting expressed genes using CAGE.
Mitsuyoshi Murata,
Hiromi Nishiyori-Sueki,
Miki Kojima-Ishiyama,
Piero Carninci,
Y. Hayashizaki,
M. Itoh
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7 |
2014 |
7
🐬
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|
🐜
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Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
17 auth.
H. Kawaji,
M. Lizio,
M. Itoh,
M. Kanamori-Katayama,
Ai Kaiho,
Hiromi Nishiyori-Sueki,
Jay W. Shin,
Miki Kojima-Ishiyama,
M. Kawano,
Mitsuyoshi Murata,
...
Noriko Ninomiya-Fukuda,
Sachi Ishikawa-Kato,
Sayaka Nagao-Sato,
Shohei Noma,
Y. Hayashizaki,
A. Forrest,
Piero Carninci
|
6 |
2014 |
6
🐜
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|
🐜
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FANTOM5 CAGE profiles of human and mouse samples
154 auth.
T. Arakawa,
S. Fukuda,
M. Furuno,
Fumi Hori,
Sachi Ishikawa-Kato,
Kaoru Kaida,
Ai Kaiho,
M. Kanamori-Katayama,
T. Kawashima,
Miki Kojima,
A. Kubosaki,
Ri-ichiroh Manabe,
Sayaka Nagao-Sato,
Kenichi Nakazato,
N. Ninomiya,
...
Hiromi Nishiyori-Sueki,
Shohei Noma,
Eri Saijyo,
Akiko Saka,
Mizuho Sakai,
Naoko Suzuki,
M. Tagami,
Shoko Watanabe,
Shigehiro Yoshida,
Peter Arner,
R. Axton,
M. Babina,
J. K. Baillie,
T. C. Barnett,
A. Beckhouse,
Antje Blumenthal,
Beatrice Bodega,
A. Bonetti,
Frank Brombacher,
A. Carlisle,
Hans C. Clevers,
M. Detmar,
Taeko Dohi,
A. S. Edge,
Matthias Edinger,
Anna Ehrlund,
Karl Ekwall,
Mitsuhiro Endoh,
Hideki Enomoto,
A. Eslami,
Michela Fagiolini,
L. Fairbairn,
M. Farach‐Carson,
Geoffrey J. Faulkner,
Carmelo Ferrai,
Lesley M Forrester,
Rie Fujita,
J. Furusawa,
T. Geijtenbeek,
T. Gingeras,
Daniel Goldowitz,
S. Guhl,
R. Guler,
S. Gustincich,
Thomas J. Ha,
Masahide Hamaguchi,
Mitsuko Hara,
Y. Hasegawa,
M. Herlyn,
Peter Heutink,
Kelly J. Hitchens,
David A. Hume,
T. Ikawa,
Y. Ishizu,
Chieko Kai,
Hiroshi Kawamoto,
J. Kempfle,
Tony J. Kenna,
J. Kere,
L. Khachigian,
Toshio Kitamura,
Sarah Klein,
S. Klinken,
Alan J. Knox,
Haruhiko Koseki,
Shigeo Koyasu,
Andreas Lennartsson,
Alan Mackay-sim,
Niklas Mejhert,
Y. Mizuno,
Hiromasa Morikawa,
K. Moro,
Kelly J. Morris,
Hozumi Motohashi,
C. Mummery,
Yutaka Nakachi,
Fumio Nakahara,
Tadasuke Nozaki,
S. Ogishima,
N. Ohkura,
H. Ohno,
M. Ohshima,
M. Okada‐Hatakeyama,
Yasushi Okazaki,
V. Orlando,
Dmitry A. Ovchinnikov,
R. Passier,
M. Patrikakis,
Ana Pombo,
S. Pradhan-Bhatt,
Michael Rehli,
P. Rizzu,
Antti Sajantila,
Shimon Sakaguchi,
Hironori Satoh,
Suzana Savvi,
A. Saxena,
Christian Schmidl,
C. Schneider,
Gundula G. Schulze-Tanzil,
Anita Schwegmann,
Guojun Sheng,
Daisuke Sugiyama,
T. Sugiyama,
Kim M. Summers,
Naoko Takahashi,
Jun Takai,
Hideki Tatsukawa,
A. Tomoiu,
Hiroo Toyoda,
M. van de Wetering,
Linda M. van den Berg,
R. Verardo,
Christine A. Wells,
Louise N. Winteringham,
Ernst J Wolvetang,
Yoko Yamaguchi,
Chiyo Yanagi-Mizuochi,
M. Yoneda,
Y. Yonekura,
S. Zucchelli,
I. Abugessaisa,
E. Arner,
J. Harshbarger,
Atsushi Kondo,
T. Lassmann,
M. Lizio,
T. Sengstag,
Jessica Severin,
H. Shimoji,
Jun Kawai,
Naoto Kondo,
M. Itoh,
C. Daub,
T. Kasukawa,
H. Kawaji,
P. Carninci,
A. Forrest,
Y. Hayashizaki
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6 |
2017 |
6
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|
🐜
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Cap Analysis of Gene Expression (CAGE): A Quantitative and Genome-Wide Assay of Transcription Start Sites.
7 auth.
M. Morioka,
H. Kawaji,
Hiromi Nishiyori-Sueki,
Mitsuyoshi Murata,
Miki Kojima-Ishiyama,
Piero Carninci,
...
M. Itoh
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4 |
2020 |
4
🐜
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|
🐜
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Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
24 auth.
Mathys Grapotte,
Manu Saraswat,
Chloé Bessière,
Christophe Menichelli,
Jordan A. Ramilowski,
Jessica Severin,
Y. Hayashizaki,
M. Itoh,
M. Tagami,
Mitsuyoshi Murata,
...
Miki Kojima-Ishiyama,
Shohei Noma,
Shuhei Noguchi,
T. Kasukawa,
A. Hasegawa,
Harukazu Suzuki,
Hiromi Nishiyori-Sueki,
M. Frith,
C. Chatelain,
Piero Carninci,
M. D. de Hoon,
W. Wasserman,
L. Bréhélin,
C. Lecellier
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4 |
2020 |
4
🐜
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|
🐬
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Low Quantity single strand CAGE (LQ-ssCAGE) maps regulatory enhancers and promoters
Hazuki Takahashi,
Hiromi Nishiyori-Sueki,
Jordan A. Ramilowski,
M. Itoh,
Piero Carninci
|
3 |
2020 |
3
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|
🐜
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Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.
34 auth.
Chi Wai Yip,
C. Hon,
K. Yasuzawa,
D. Sivaraman,
Jordan A. Ramilowski,
Youtaro Shibayama,
Saumya Agrawal,
Anika V. Prabhu,
Callum Parr,
Jessica Severin,
Y. Lan,
J. Dostie,
A. Petri,
Hiromi Nishiyori-Sueki,
M. Tagami,
...
M. Itoh,
F. López-Redondo,
Tsukasa Kouno,
Jen-Chien Chang,
J. Luginbühl,
Masaki Kato,
Mitsuyoshi Murata,
Wing Hin Yip,
Xufeng Shu,
I. Abugessaisa,
A. Hasegawa,
Harukazu Suzuki,
Sakari Kauppinen,
K. Yagi,
Yasushi Okazaki,
T. Kasukawa,
Michiel J. L. de Hoon,
P. Carninci,
Jay W. Shin
|
3 |
2022 |
3
🐜
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|
🐜
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High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance
26 auth.
Yuki Yoshida,
Nurislam Shaikhutdinov,
O. Kozlova,
M. Itoh,
M. Tagami,
Mitsuyoshi Murata,
Hiromi Nishiyori-Sueki,
Miki Kojima-Ishiyama,
Shohei Noma,
A. Cherkasov,
G. Gazizova,
A. Nasibullina,
Ruslan M. Deviatiiarov,
E. Shagimardanova,
A. Ryabova,
...
K. Yamaguchi,
Takahiro Bino,
S. Shigenobu,
Shoko Tokumoto,
Yugo Miyata,
R. Cornette,
Takahiro G. Yamada,
Akira Funahashi,
M. Tomita,
O. Gusev,
T. Kikawada
|
3 |
2022 |
3
🐜
|
