|
🦁
|
BEDTools: The Swiss‐Army Tool for Genome Feature Analysis
A. Quinlan
|
10 |
2014 |
10
🦁
|
|
🐜
|
Nanopore sequencing and assembly of a human genome with ultra-long reads
26 auth.
Miten Jain,
S. Koren,
K. Miga,
J. Quick,
Arthur C. Rand,
T. Sasani,
J. R. Tyson,
A. Beggs,
A. Dilthey,
Ian T. Fiddes,
S. Malla,
Hannah Marriott,
T. Nieto,
J. O’Grady,
Hugh E. Olsen,
...
Brent S. Pedersen,
A. Rhie,
H. Richardson,
A. Quinlan,
T. Snutch,
Louise Tee,
B. Paten,
A. Phillippy,
J. Simpson,
N. Loman,
M. Loose
|
10 |
2017 |
10
🐜
|
|
🐬
|
LUMPY: a probabilistic framework for structural variant discovery
Ryan M. Layer,
Colby Chiang,
A. Quinlan,
Ira M. Hall
|
10 |
2012 |
10
🐬
|
|
🐬
|
BamTools: a C++ API and toolkit for analyzing and managing BAM files
Derek W. Barnett,
Erik K. Garrison,
A. Quinlan,
Michael P. Strömberg,
Gabor T. Marth
|
9 |
2011 |
9
🐬
|
|
🐢
|
Mosdepth: quick coverage calculation for genomes and exomes
Brent S. Pedersen,
A. Quinlan
|
9 |
2017 |
9
🐢
|
|
🐜
|
Copy number variation detection and genotyping from exome sequence data
9 auth.
Niklas Krumm,
Peter H. Sudmant,
Arthur Ko,
B. O’Roak,
Maika Malig,
Bradley P. Coe,
...
A. Quinlan,
D. Nickerson,
E. Eichler
|
9 |
2012 |
9
🐜
|
|
🐜
|
Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers
26 auth.
S. Onengut-Gumuscu,
Wei-Min Chen,
O. Burren,
N. Cooper,
A. Quinlan,
J. Mychaleckyj,
Emily Farber,
J. Bonnie,
M. Szpak,
E. Schofield,
P. Achuthan,
Hui Guo,
Mary D. Fortune,
H. Stevens,
N. Walker,
...
L. D. Ward,
A. Kundaje,
Manolis Kellis,
M. Daly,
J. Barrett,
J. Cooper,
P. Deloukas,
J. Todd,
C. Wallace,
P. Concannon,
S. Rich
|
9 |
2015 |
9
🐜
|
|
🐜
|
SpeedSeq: Ultra-fast personal genome analysis and interpretation
9 auth.
Colby Chiang,
Ryan M. Layer,
G. Faust,
Michael R. Lindberg,
David B. Rose,
Erik P. Garrison,
...
Gabor T. Marth,
A. Quinlan,
Ira M. Hall
|
8 |
2014 |
8
🐜
|
|
🐜
|
Whole-genome sequencing and variant discovery in C. elegans
20 auth.
L. Hillier,
Gabor T. Marth,
A. Quinlan,
D. Dooling,
Ginger A. Fewell,
Derek W. Barnett,
Paul M. Fox,
J. Glasscock,
M. Hickenbotham,
Weichun Huang,
...
V. Magrini,
Ryan Richt,
Sacha N Sander,
D. A. Stewart,
Michael P. Stromberg,
Eric F. Tsung,
T. Wylie,
T. Schedl,
R. Wilson,
E. Mardis
|
8 |
2008 |
8
🐜
|
|
🐢
|
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations
Ryan K. Dale,
Brent S. Pedersen,
A. Quinlan
|
8 |
2011 |
8
🐢
|
|
🐢
|
Poretools: a toolkit for analyzing nanopore sequence data
N. Loman,
A. Quinlan
|
8 |
2014 |
8
🐢
|
|
🐢
|
GEMINI: Integrative Exploration of Genetic Variation and Genome Annotations
U. Paila,
B. Chapman,
Rory D. Kirchner,
A. Quinlan
|
8 |
2013 |
8
🐢
|
|
🦁
|
Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome.
8 auth.
A. Quinlan,
Royden A. Clark,
S. Sokolova,
Mitchell L. Leibowitz,
Yujun Zhang,
M. Hurles,
...
J. Mell,
Ira M. Hall
|
8 |
2010 |
8
🦁
|
