|
π’
|
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li,
Chi-Man Liu,
Ruibang Luo,
K. Sadakane,
T. Lam
|
12 |
2014 |
12
π’
|
|
π
|
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
30 auth.
Ruibang Luo,
Binghang Liu,
Yinlong Xie,
Zhenyu Li,
Weihua Huang,
Jianying Yuan,
Guangzhu He,
Yanxiang Chen,
Qi Pan,
Yunjie Liu,
Jingbo Tang,
Gengxiong Wu,
Hao Zhang,
Yujian Shi,
Yong Liu,
...
Chang Yu,
Bo Wang,
Yao Lu,
Changlei Han,
David W. Cheung,
S. Yiu,
Shaoliang Peng,
Zhu Xiaoqian,
Guangming Liu,
Xiangke Liao,
Yingrui Li,
H. Yang,
Jian Wang,
T. Lam,
Jun Wang
|
12 |
2012 |
12
π
|
|
π
|
SOAP2: an improved ultrafast tool for short read alignment
7 auth.
Ruiqiang Li,
Chang Yu,
Yingrui Li,
T. Lam,
S. Yiu,
K. Kristiansen,
...
Jun Wang
|
11 |
2009 |
11
π
|
|
π’
|
MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices.
8 auth.
Dinghua Li,
Ruibang Luo,
Chi-Man Liu,
Chi-Ming Leung,
H. Ting,
K. Sadakane,
...
H. Yamashita,
T. Lam
|
10 |
2016 |
10
π’
|
|
π
|
The sequence and de novo assembly of the giant panda genome
121 auth.
Ruiqiang Li,
Wei Fan,
G. Tian,
Hong-mei Zhu,
Lin He,
Jing Cai,
Quanfei Huang,
Q. Cai,
Yinqi Bai,
Zhihe Zhang,
Yaping Zhang,
Wen Wang,
Jun Li,
F. Wei,
Heng Li,
...
Min Jian,
Jianwen Li,
Zhaolei Zhang,
R. Nielsen,
W. Gu,
Zhentao Yang,
Zhaoling Xuan,
O. Ryder,
F. C. Leung,
Yan Zhou,
Jianjun Cao,
Xiao Sun,
Yonggui Fu,
X. Fang,
Xiaosen Guo,
Bo Wang,
R. Hou,
F. Shen,
Bo Mu,
Peixiang Ni,
Runmao Lin,
W. Qian,
Guodong Wang,
Chang Yu,
W. Nie,
Jinhuan Wang,
Zhigang Wu,
Huiqing Liang,
Jiumeng Min,
Qi Wu,
Shifeng Cheng,
Jue Ruan,
Mingwei Wang,
Zhongbin Shi,
Ming-Xia Wen,
Binghang Liu,
Xiaoli Ren,
Huisong Zheng,
D. Dong,
Kathleen Cook,
Gao Shan,
Hao Zhang,
C. Kosiol,
Xueying Xie,
Zuhong Lu,
Hancheng Zheng,
Yingrui Li,
C. Steiner,
T. Lam,
Siyuan Lin,
Qinghui Zhang,
Guoqing Li,
Jing Tian,
Timing Gong,
Hongde Liu,
De-Lu Zhang,
L. Fang,
C. Ye,
Juanbin Zhang,
Wenbo Hu,
A. Xu,
Yuanyuan Ren,
Guojie Zhang,
M. Bruford,
Qibin Li,
Lijia Ma,
Yiran Guo,
Na An,
Yujie Hu,
Yang Zheng,
Yongyong Shi,
Zhiqiang Li,
Qing Liu,
Yanling Chen,
J. Zhao,
N. Qu,
Shancen Zhao,
Fengyun Tian,
Xiaoling Wang,
Haiyin Wang,
Lizhi Xu,
Xiao Liu,
T. VinaΕ,
Yajun Wang,
T. Lam,
S. Yiu,
Shiping Liu,
He-ming Zhang,
Desheng Li,
Y. Huang,
Xia Wang,
Guohua Yang,
Zhi Jiang,
Junyi Wang,
Nan Qin,
Li Li,
Jingxiang Li,
L. Bolund,
K. Kristiansen,
G. Wong,
M. Olson,
Xiuqing Zhang,
Songgang Li,
Huanming Yang,
Jian Wang,
Jun Wang
|
10 |
2010 |
10
π
|
|
π
|
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
16 auth.
Yinlong Xie,
Gengxiong Wu,
Jingbo Tang,
Ruibang Luo,
Jordan Patterson,
Shanlin Liu,
Weihua Huang,
Guangzhu He,
Shengchang Gu,
Sheng-qiang Li,
...
Xin Zhou,
T. Lam,
Yingrui Li,
Xun Xu,
G. Wong,
Jun Wang
|
9 |
2013 |
9
π
|
|
π
|
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
91 auth.
K. Bradnam,
Joseph N. Fass,
A. Alexandrov,
Paul Baranay,
Michael Bechner,
I. Birol,
SΓ©bastien Boisvert,
Jarrod Chapman,
Guillaume Chapuis,
R. Chikhi,
H. Chitsaz,
Wen-Chi Chou,
J. Corbeil,
Cristian Del Fabbro,
T. R. Docking,
...
R. Durbin,
Dent Earl,
S. Emrich,
Pavel Fedotov,
Nuno A. Fonseca,
Ganeshkumar Ganapathy,
R. Gibbs,
S. Gnerre,
ΓlΓ©nie Godzaridis,
Steve Goldstein,
M. Haimel,
Giles Hall,
D. Haussler,
Joseph B Hiatt,
Isaac Y. Ho,
Jason T. Howard,
Martin Hunt,
S. Jackman,
D. Jaffe,
E. Jarvis,
Huaiyang Jiang,
S. Kazakov,
P. Kersey,
J. Kitzman,
James R. Knight,
S. Koren,
T. Lam,
D. Lavenier,
François Laviolette,
Yingrui Li,
Zhenyu Li,
Binghang Liu,
Yue Liu,
Ruibang Luo,
Iain MacCallum,
M. MacManes,
Nicolas Maillet,
S. Melnikov,
D. Naquin,
Z. Ning,
T. Otto,
B. Paten,
O. Paulo,
A. Phillippy,
F. Pina-Martins,
Michael Place,
Dariusz Przybylski,
X. Qin,
Carson Qu,
Filipe J. Ribeiro,
S. Richards,
D. Rokhsar,
J. Ruby,
S. Scalabrin,
M. Schatz,
D. Schwartz,
A. Sergushichev,
Ted Sharpe,
T. Shaw,
J. Shendure,
Yujian Shi,
J. Simpson,
H. Song,
F. Tsarev,
F. Vezzi,
Riccardo Vicedomini,
Bruno M. Vieira,
Jun Wang,
K. Worley,
Shuangye Yin,
S. Yiu,
Jianying Yuan,
Guojie Zhang,
Hao Zhang,
Shiguo Zhou,
I. Korf
|
9 |
2013 |
9
π
|
|
π
|
The sequence and de novo assembly of the giant panda genome
121 auth.
Ruiqiang Li,
Wei Fan,
G. Tian,
Hong-mei Zhu,
Lin He,
Jing Cai,
Quanfei Huang,
Q. Cai,
Yinqi Bai,
Zhihe Zhang,
Ya-ping Zhang,
Wen Wang,
Jun Li,
F. Wei,
Heng Li,
...
Min Jian,
Jianwen Li,
Zhaolei Zhang,
R. Nielsen,
W. Gu,
Zhentao Yang,
Zhaoling Xuan,
O. Ryder,
F. C. Leung,
Yan Zhou,
Jianjun Cao,
Xiao Sun,
Yonggui Fu,
X. Fang,
Xiaosen Guo,
Bo Wang,
R. Hou,
F. Shen,
Bo Mu,
Peixiang Ni,
Runmao Lin,
W. Qian,
Guo-Dong Wang,
Chang Yu,
W. Nie,
Jinhuan Wang,
Zhigang Wu,
Huiqing Liang,
Jiumeng Min,
Qi Wu,
Shifeng Cheng,
Jue Ruan,
Mingwei Wang,
Zhongbin Shi,
Ming-Xia Wen,
Binghang Liu,
Xiaoli Ren,
Huisong Zheng,
D. Dong,
Kathleen Cook,
Gao Shan,
Hao Zhang,
C. Kosiol,
Xueying Xie,
Zuhong Lu,
Hancheng Zheng,
Yingrui Li,
C. Steiner,
T. Lam,
Siyuan Lin,
Qinghui Zhang,
Guoqing Li,
Jing Tian,
Timing Gong,
Hongde Liu,
De-Lu Zhang,
L. Fang,
C. Ye,
Juanbin Zhang,
Wenbo Hu,
A. Xu,
Yuanyuan Ren,
Guojie Zhang,
M. Bruford,
Qibin Li,
Lijia Ma,
Yiran Guo,
Na An,
Yujie Hu,
Yang Zheng,
Yongyong Shi,
Zhiqiang Li,
Qing Liu,
Yanling Chen,
J. Zhao,
N. Qu,
Shancen Zhao,
Fengyun Tian,
Xiaoling Wang,
Haiyin Wang,
Lizhi Xu,
Xiao Liu,
T. VinaΕ,
Yajun Wang,
T. Lam,
S. Yiu,
Shiping Liu,
He-ming Zhang,
Desheng Li,
Y. Huang,
Xia Wang,
Guohua Yang,
Zhi Jiang,
Junyi Wang,
Nan Qin,
Li Li,
Jingxiang Li,
L. Bolund,
K. Kristiansen,
G. Wong,
M. Olson,
Xiuqing Zhang,
Songgang Li,
Huanming Yang,
Jian Wang,
Jun Wang
|
8 |
2010 |
8
π
|
|
π
|
The sequence and de novo assembly of the giant panda genome
121 auth.
Ruiqiang Li,
Wei Fan,
G. Tian,
Hong-mei Zhu,
Lin He,
Jing Cai,
Quanfei Huang,
Q. Cai,
Yinqi Bai,
Zhihe Zhang,
Ya-ping Zhang,
Wen Wang,
Jun Li,
F. Wei,
Heng Li,
...
Min Jian,
Jianwen Li,
Zhaolei Zhang,
R. Nielsen,
W. Gu,
Zhentao Yang,
Zhaoling Xuan,
O. Ryder,
F. C. Leung,
Yan Zhou,
Jianjun Cao,
Xiao Sun,
Yonggui Fu,
X. Fang,
Xiaosen Guo,
Bo Wang,
R. Hou,
F. Shen,
Bo Mu,
Peixiang Ni,
Runmao Lin,
W. Qian,
Guo-Dong Wang,
Chang Yu,
W. Nie,
Jinhuan Wang,
Zhigang Wu,
Huiqing Liang,
Jiumeng Min,
Qi Wu,
Shifeng Cheng,
Jue Ruan,
Mingwei Wang,
Zhongbin Shi,
Ming-Xia Wen,
Binghang Liu,
Xiaoli Ren,
Huisong Zheng,
D. Dong,
Kathleen Cook,
Gao Shan,
Hao Zhang,
C. Kosiol,
Xueying Xie,
Zuhong Lu,
Hancheng Zheng,
Yingrui Li,
C. Steiner,
T. Lam,
Siyuan Lin,
Qinghui Zhang,
Guoqing Li,
Jing Tian,
Timing Gong,
Hongde Liu,
De-Lu Zhang,
L. Fang,
C. Ye,
Juanbin Zhang,
Wenbo Hu,
A. Xu,
Yuanyuan Ren,
Guojie Zhang,
M. Bruford,
Qibin Li,
Lijia Ma,
Yiran Guo,
Na An,
Yujie Hu,
Yang Zheng,
Yongyong Shi,
Zhiqiang Li,
Qing Liu,
Yanling Chen,
J. Zhao,
N. Qu,
Shancen Zhao,
Fengyun Tian,
Xiaoling Wang,
Haiyin Wang,
Lizhi Xu,
Xiao Liu,
T. VinaΕ,
Yajun Wang,
T. Lam,
S. Yiu,
Shiping Liu,
He-ming Zhang,
Desheng Li,
Y. Huang,
Xia Wang,
Guohua Yang,
Zhi Jiang,
Junyi Wang,
Nan Qin,
Li Li,
Jingxiang Li,
L. Bolund,
K. Kristiansen,
G. Wong,
M. Olson,
Xiuqing Zhang,
Songgang Li,
Huanming Yang,
Jian Wang,
Jun Wang
|
8 |
2010 |
8
π
|
|
π
|
Erratum: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
30 auth.
Ruibang Luo,
Binghang Liu,
Yinlong Xie,
Zhenyu Li,
Weihua Huang,
Jianying Yuan,
Guangzhu He,
Yanxiang Chen,
Qi Pan,
Yunjie Liu,
Jingbo Tang,
Gengxiong Wu,
Hao Zhang,
Yujian Shi,
Yong Liu,
...
Chang Yu,
Bo Wang,
Yao Lu,
Changlei Han,
David W. Cheung,
S. Yiu,
Shaoliang Peng,
Zhu Xiaoqian,
Guangming Liu,
Xiangke Liao,
Yingrui Li,
Huanming Yang,
Jian Wang,
T. Lam,
Jun Wang
|
7 |
2015 |
7
π
|
|
π’
|
SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner
17 auth.
Ruibang Luo,
Thomas K. F. Wong,
Jianqiao Zhu,
Chi-Man Liu,
Xiaoqian Zhu,
E. Wu,
Lap-Kei Lee,
Haoxiang Lin,
Wenjuan Zhu,
David W. Cheung,
...
H. Ting,
S. Yiu,
Shaoliang Peng,
Chang Yu,
Yingrui Li,
Ruiqiang Li,
T. Lam
|
7 |
2013 |
7
π’
|
|
π¬
|
Compressed indexing and local alignment of DNA
T. Lam,
W. Sung,
Siu-Lung Tam,
C. Wong,
S. Yiu
|
7 |
2008 |
7
π¬
|
|
π
|
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
11 auth.
Binghang Liu,
Jianying Yuan,
S. Yiu,
Zhenyu Li,
Yinlong Xie,
Yanxiang Chen,
...
Yujian Shi,
H. Zhang,
Yingrui Li,
T. Lam,
Ruibang Luo
|
7 |
2012 |
7
π
|
|
π¬
|
High Throughput Short Read Alignment via Bi-directional BWT
T. Lam,
Ruiqiang Li,
Alan Tam,
Simon C. K. Wong,
E. Wu,
S. Yiu
|
6 |
2009 |
6
π¬
|
