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The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
11 auth.
A. McKenna,
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2010 |
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A framework for variation discovery and genotyping using next-generation DNA sequencing data
18 auth.
M. DePristo,
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2011 |
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Comprehensive molecular characterization of human colon and rectal cancer
313 auth.
D. Muzny,
M. Bainbridge,
K. Chang,
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R. Beroukhim,
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Spring Yingchun Liu,
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2012 |
12
๐
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๐
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The Somatic Genomic Landscape of Glioblastoma
58 auth.
C. Brennan,
R. Verhaak,
A. McKenna,
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Chang-Jiun Wu,
G. Genovese,
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...
J. Barnholtz-Sloan,
L. Zou,
Rahulsimham Vegesna,
S. Shukla,
G. Ciriello,
W. Yung,
Wei Zhang,
C. Sougnez,
T. Mikkelsen,
K. Aldape,
D. Bigner,
Erwin G. Van Meir,
M. Prados,
A. Sloan,
K. Black,
J. Eschbacher,
G. Finocchiaro,
W. Friedman,
D. Andrews,
A. Guha,
M. Iacocca,
B. O'neill,
G. Foltz,
J. Myers,
D. Weisenberger,
R. Penny,
R. Kucherlapati,
C. Perou,
D. Hayes,
R. Gibbs,
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E. Lander,
P. Spellman,
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J. Weinstein,
M. Meyerson,
S. Gabriel,
P. Laird,
D. Haussler,
G. Getz,
L. Chin
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12 |
2013 |
12
๐
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Comprehensive genomic characterization of squamous cell lung cancers
333 auth.
P. Hammerman,
Douglas Voet,
M. Lawrence,
Douglas Voet,
R. Jing,
K. Cibulskis,
A. Sivachenko,
P. Stojanov,
A. McKenna,
E. Lander,
S. Gabriel,
G. Getz,
M. Imieliลski,
E. Helman,
Bryan Hernandez,
...
Nam Pho,
M. Meyerson,
Andy Chu,
Jung E. Hye-Chun,
A. Mungall,
E. Pleasance,
A. G. Robertson,
Payal Sipahimalani,
D. Stoll,
M. Balasundaram,
I. Birol,
Y. Butterfield,
E. Chuah,
R. Coope,
R. Corbett,
Noreen Dhalla,
R. Guin,
A. He,
Carrie Hirst,
M. Hirst,
R. Holt,
Darlene Lee,
H. Li,
Michael Mayo,
Richard A. Moore,
K. Mungall,
K. Nip,
A. Olshen,
J. Schein,
Jared R. Slobodan,
Angela Tam,
N. Thiessen,
R. Varhol,
Thomas Zeng,
Yongjun Zhao,
Steven J. M. Jones,
M. Marra,
G. Saksena,
A. Cherniack,
S. Schumacher,
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S. Carter,
Huy L. Nguyen,
R. Onofrio,
A. Crenshaw,
K. Ardlie,
R. Beroukhim,
W. Winckler,
A. Protopopov,
Jianhua Zhang,
Angela Hadjipanayis,
Semin Lee,
Ruibin Xi,
Lixing Yang,
X. Ren,
Hailei Zhang,
S. Shukla,
Peng-Chieh Chen,
Psalm S. Haseley,
E. Lee,
L. Chin,
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N. Socci,
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Juok Cho,
Marc-Danie Nazaire,
James Robinson,
H. Thorvaldsdรณttir,
J. Mesirov,
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V. Seshan,
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Rehan Akbani,
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B. Broom,
Tod D. Casasent,
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Chris Wakefield,
R. Cason,
K. Baggerly,
J. Weinstein,
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C. Benz,
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R. Raman,
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2012 |
11
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The Mutational Landscape of Head and Neck Squamous Cell Carcinoma
39 auth.
Nicolas Stransky,
A. Egloff,
Aaron D. Tward,
Aleksandar D. Kostic,
K. Cibulskis,
A. Sivachenko,
G. Kryukov,
M. Lawrence,
C. Sougnez,
A. McKenna,
Erica Shefler,
A. Ramos,
P. Stojanov,
S. Carter,
Douglas Voet,
...
M. Cortรฉs,
Daniel Auclair,
Michael F. Berger,
G. Saksena,
C. Guiducci,
R. Onofrio,
Melissa Parkin,
M. Romkes,
J. Weissfeld,
Raja R. Seethala,
Lin Wang,
C. Rangel-Escareรฑo,
J. Fernรกndez-Lรณpez,
A. Hidalgo-Miranda,
J. Melรฉndez-Zajgla,
W. Winckler,
K. Ardlie,
S. Gabriel,
M. Meyerson,
Eric S. Lander,
G. Getz,
Todd R. Golub,
Levi A. Garraway,
J. Grandis
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2011 |
11
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Mutational heterogeneity in cancer and the search for new cancer genes
64 auth.
M. Lawrence,
P. Stojanov,
P. Polak,
G. Kryukov,
K. Cibulskis,
A. Sivachenko,
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A. McKenna,
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Nicolas Stransky,
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M. Cortรฉs,
D. Auclair,
G. Saksena,
Douglas Voet,
M. Noble,
D. Dicara,
Pei Lin,
Lee T Lichtenstein,
David I Heiman,
T. Fennell,
M. Imieliลski,
Bryan Hernandez,
Eran Hodis,
S. Baca,
A. Dulak,
Jens G. Lohr,
D. Landau,
Catherine J. Wu,
J. Melรฉndez-Zajgla,
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A. Koren,
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W. Winckler,
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K. Stegmaier,
A. Bass,
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2014 |
11
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Prospective Derivation of a Living Organoid Biobank of Colorectal Cancer Patients
37 auth.
M. Wetering,
Hayley E. Francies,
J. Francis,
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W. V. Houdt,
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J. Blokker,
S. Jaksani,
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Vivian S. W. Li,
Sara Seepo,
C. Pedamallu,
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R. Versteeg,
A. Oudenaarden,
J. Saez-Rodriguez,
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M. Stratton,
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M. Meyerson,
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H. Clevers
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10 |
2015 |
10
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Absolute quantification of somatic DNA alterations in human cancer
16 auth.
S. Carter,
K. Cibulskis,
E. Helman,
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Hui Shen,
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P. Laird,
R. Onofrio,
W. Winckler,
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D. Pellman,
D. Levine,
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M. Meyerson,
G. Getz
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10 |
2012 |
10
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Evolution and Impact of Subclonal Mutations in Chronic Lymphocytic Leukemia
26 auth.
D. Landau,
S. Carter,
P. Stojanov,
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2012 |
10
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The genetic landscape of high-risk neuroblastoma
60 auth.
Trevor J Pugh,
O. Morozova,
E. Attiyeh,
S. Asgharzadeh,
Jun S. Wei,
D. Auclair,
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K. Cibulskis,
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Lee Lichenstein,
A. McKenna,
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...
A. Ramos,
Erica Shefler,
A. Sivachenko,
C. Sougnez,
C. Stewart,
Adrian Ally,
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R. Corbett,
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Alireza Hadj Khodabakshi,
M. Krzywinski,
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Richard A. Moore,
K. Mungall,
Jenny Q. Qian,
Angela Tam,
N. Thiessen,
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K. Cole,
M. Diamond,
S. Diskin,
Y. Mossรฉ,
A. Wood,
Lingyun Ji,
R. Sposto,
Thomas C. Badgett,
W. London,
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J. Gastier-Foster,
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J. G. Auvil,
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2013 |
10
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Widespread genetic heterogeneity in multiple myeloma: implications for targeted therapy.
21 auth.
Jens G. Lohr,
P. Stojanov,
S. Carter,
Peter Cruz-Gordillo,
M. Lawrence,
D. Auclair,
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Joshua Gould,
G. Saksena,
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K. Cibulskis,
A. McKenna,
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S. Schumacher,
Mara W Rosenberg,
G. Getz,
T. Golub
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2014 |
9
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Mutational heterogeneity in cancer and the search for new cancer genes
64 auth.
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P. Stojanov,
P. Polak,
G. Kryukov,
K. Cibulskis,
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D. Auclair,
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T. Fennell,
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Bryan Hernandez,
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Jens G. Lohr,
D. Landau,
Catherine J. Wu,
J. Melรฉndez-Zajgla,
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A. Koren,
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R. Onofrio,
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K. Stegmaier,
A. Bass,
L. Garraway,
M. Meyerson,
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D. Gordenin,
S. Sunyaev,
E. Lander,
G. Getz
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9 |
2013 |
9
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Genomic Characterization of Brain Metastases Reveals Branched Evolution and Potential Therapeutic Targets.
44 auth.
P. Brastianos,
S. Carter,
S. Santagata,
D. Cahill,
A. Taylor-Weiner,
Robert Jones,
E. V. Van Allen,
M. Lawrence,
Peleg Horowitz,
K. Cibulskis,
K. Ligon,
J. Tabernero,
J. Seoane,
E. Martรญnez-Sรกez,
W. Curry,
...
I. Dunn,
S. Paek,
Sung-Hye Park,
A. McKenna,
A. Chevalier,
Mara W Rosenberg,
F. Barker,
C. Gill,
P. Van Hummelen,
A. Thorner,
B. Johnson,
M. Hoang,
T. Choueiri,
S. Signoretti,
C. Sougnez,
M. Rabin,
N. Lin,
E. Winer,
A. Stemmer-Rachamimov,
M. Meyerson,
L. Garraway,
S. Gabriel,
E. Lander,
R. Beroukhim,
T. Batchelor,
J. Baselga,
D. Louis,
G. Getz,
W. Hahn
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9 |
2015 |
9
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The genetic landscape of clinical resistance to RAF inhibition in metastatic melanoma.
32 auth.
E. V. Van Allen,
N. Wagle,
A. Sucker,
D. Treacy,
Cory M. Johannessen,
Eva M. Goetz,
C. Place,
A. Taylor-Weiner,
S. Whittaker,
G. Kryukov,
Eran Hodis,
Mara W Rosenberg,
A. McKenna,
K. Cibulskis,
Deborah N. Farlow,
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L. Zimmer,
U. Hillen,
R. Gutzmer,
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H. Gogas,
F. Egberts,
C. Berking,
U. Trefzer,
C. Loquai,
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J. Hassel,
S. Gabriel,
S. Carter,
G. Getz,
L. Garraway,
D. Schadendorf
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9 |
2014 |
9
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