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An integrated map of structural variation in 2,504 human genomes
82 auth.
Peter H. Sudmant,
T. Rausch,
E. Gardner,
R. Handsaker,
A. Abyzov,
J. Huddleston,
Yan Zhang,
K. Ye,
G. Jun,
Markus Hsi-Yang Fritz,
Miriam K. Konkel,
A. Malhotra,
A. Stütz,
Xinghua Shi,
Francesco Paolo Casale,
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Jieming Chen,
F. Hormozdiari,
Gargi Dayama,
Ken Chen,
Maika Malig,
Mark J. P. Chaisson,
Klaudia Walter,
Sascha Meiers,
Seva Kashin,
Erik P. Garrison,
A. Auton,
Hugo Y. K. Lam,
Xinmeng Jasmine Mu,
C. Alkan,
Danny Antaki,
Taejeong Bae,
Eliza Cerveira,
P. Chines,
Zechen Chong,
Laura Clarke,
E. Dal,
L. Ding,
Sarah B. Emery,
Xian Fan,
Madhusudan Gujral,
F. Kahveci,
J. Kidd,
Yu Kong,
Eric-Wubbo Lameijer,
Shane A. McCarthy,
Paul Flicek,
R. Gibbs,
Gabor T. Marth,
C. Mason,
A. Menelaou,
D. Muzny,
Bradley J. Nelson,
Amina Noor,
N. Parrish,
Matthew Pendleton,
Andrew Quitadamo,
B. Raeder,
E. Schadt,
Mallory Romanovitch,
A. Schlattl,
R. Sebra,
A. Shabalin,
A. Untergasser,
Jerilyn A. Walker,
Min Wang,
F. Yu,
Chengsheng Zhang,
Jing Zhang,
Xiangqun Zheng-Bradley,
Wanding Zhou,
T. Zichner,
J. Sebat,
M. Batzer,
S. Mccarroll,
Ryan E. Mills,
M. Gerstein,
A. Bashir,
O. Stegle,
S. Devine,
Charles Lee,
E. Eichler,
J. Korbel
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11 |
2015 |
11
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Mapping copy number variation by population scale genome sequencing
57 auth.
Ryan E. Mills,
Klaudia Walter,
C. Stewart,
R. Handsaker,
Ken Chen,
C. Alkan,
A. Abyzov,
Seungtai Yoon,
K. Ye,
R. K. Cheetham,
A. Chinwalla,
D. Conrad,
Yutao Fu,
Fabian Grubert,
I. Hajirasouliha,
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F. Hormozdiari,
L. Iakoucheva,
Z. Iqbal,
Shuli Kang,
J. Kidd,
Miriam K. Konkel,
Joshua M. Korn,
Ekta Khurana,
Deniz Kura,
Hugo Y. K. Lam,
Jing Leng,
Ruiqiang Li,
Yingrui Li,
Chang-Yun Lin,
Ruibang Luo,
X. Mu,
J. Nemesh,
H. Peckham,
T. Rausch,
A. Scally,
Xinghua Shi,
Michael P. Stromberg,
A. Stütz,
A. Urban,
Jerilyn A. Walker,
Jiantao Wu,
Yujun Zhang,
Zhengdong D. Zhang,
M. Batzer,
L. Ding,
G. T. Marth,
G. McVean,
J. Sebat,
M. Snyder,
Jun Wang,
Kenny Q. Ye,
E. Eichler,
M. Gerstein,
M. Hurles,
Charles Lee,
S. Mccarroll,
J. Korbel
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10 |
2010 |
10
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Multi-platform discovery of haplotype-resolved structural variation in human genomes
90 auth.
Mark J. P. Chaisson,
A. Sanders,
Xuefang Zhao,
A. Malhotra,
David Porubsky,
T. Rausch,
E. Gardner,
O. Rodriguez,
Li Guo,
Ryan L. Collins,
Xian Fan,
Jia Wen,
R. Handsaker,
S. Fairley,
Zev N. Kronenberg,
...
Xiangmeng Kong,
F. Hormozdiari,
Dillon Lee,
A. Wenger,
A. Hastie,
Danny Antaki,
P. Audano,
H. Brand,
Stuart Cantsilieris,
H. Cao,
Eliza Cerveira,
Chong-Jian Chen,
Xintong Chen,
C. Chin,
Zechen Chong,
Nelson Chuang,
D. Church,
Laura Clarke,
Andrew Farrell,
Joey Flores,
Timur Galeev,
David U. Gorkin,
Madhusudan Gujral,
V. Guryev,
W. H. Heaton,
J. Korlach,
Sushant Kumar,
J. Kwon,
Jong Eun Lee,
Joyce Lee,
Wan-Ping Lee,
Sau Peng Lee,
Patrick J. Marks,
K. Viaud-Martinez,
Sascha Meiers,
Katherine M. Munson,
Fábio C. P. Navarro,
Bradley J. Nelson,
Conor Nodzak,
Amina Noor,
S. Kyriazopoulou-Panagiotopoulou,
A. Pang,
Yunjiang Qiu,
Gabriel Rosanio,
Mallory Ryan,
A. Stütz,
D. Spierings,
Alistair N. Ward,
AnneMarie E. Welch,
M. Xiao,
W. Xu,
Chengsheng Zhang,
Qihui Zhu,
Xiangqun Zheng-Bradley,
G. Jun,
L. Ding,
C. Koh,
B. Ren,
Paul Flicek,
Ken Chen,
M. Gerstein,
P. Kwok,
P. Lansdorp,
Gabor T. Marth,
J. Sebat,
Xinghua Shi,
A. Bashir,
K. Ye,
S. Devine,
M. Talkowski,
Ryan E. Mills,
T. Marschall,
J. Korbel,
E. Eichler,
Charles Lee
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9 |
2017 |
9
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Haplotype-resolved diverse human genomes and integrated analysis of structural variation
65 auth.
Peter Ebert,
P. Audano,
Qihui Zhu,
Bernardo Rodriguez-Martin,
David Porubsky,
M. Bonder,
Arvis Sulovari,
Jana Ebler,
Weichen Zhou,
Rebecca Serra Mari,
F. Yilmaz,
Xuefang Zhao,
Pinghsun Hsieh,
Joyce Lee,
Sushant Kumar,
...
Jiadong Lin,
T. Rausch,
Yu Chen,
Jingwen Ren,
Martín Santamarina,
Wolfram Höps,
Hufsah Ashraf,
Nelson Chuang,
Xiaofei Yang,
Katherine M. Munson,
Alexandra P. Lewis,
S. Fairley,
L. Tallon,
Wayne E. Clarke,
A. Basile,
M. Byrska-Bishop,
A. Corvelo,
U. S. Evani,
Tsung-Yu Lu,
Mark J. P. Chaisson,
Junjie Chen,
Chong Li,
H. Brand,
A. Wenger,
M. Ghareghani,
William T. Harvey,
B. Raeder,
Patrick Hasenfeld,
Allison A. Regier,
H. Abel,
Ira M. Hall,
Paul Flicek,
O. Stegle,
M. Gerstein,
J. Tubío,
Zepeng Mu,
Yang I. Li,
Xinghua Shi,
A. Hastie,
K. Ye,
Zechen Chong,
A. Sanders,
M. Zody,
M. Talkowski,
Ryan E. Mills,
S. Devine,
Charles Lee,
J. Korbel,
T. Marschall,
E. Eichler
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8 |
2021 |
8
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Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
22 auth.
D. Pinto,
K. Darvishi,
Xinghua Shi,
D. Rajan,
Diane Rigler,
Tomas W. Fitzgerald,
A. C. Lionel,
B. Thiruvahindrapuram,
J. MacDonald,
Ryan E. Mills,
...
Aparna Prasad,
K. Noonan,
S. Gribble,
E. Prigmore,
P. Donahoe,
Richard S. Smith,
Ji Hyeon Park,
M. Hurles,
N. Carter,
Charles Lee,
S. Scherer,
L. Feuk
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8 |
2011 |
8
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A Network Based Method for Analysis of lncRNA-Disease Associations and Prediction of lncRNAs Implicated in Diseases
7 auth.
Xiaofei Yang,
Lin Gao,
Xingli Guo,
Xinghua Shi,
Hao Wu,
Fei Song,
...
Bingbo Wang
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7 |
2014 |
7
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The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
29 auth.
L. K. McNeil,
C. Reich,
R. Aziz,
D. Bartels,
Matthew Cohoon,
T. Disz,
R. Edwards,
S. Gerdes,
Kaitlyn Hwang,
Michael Kubal,
G. Margaryan,
Folker Meyer,
W. Mihalo,
G. Olsen,
R. Olson,
...
A. Osterman,
Daniel Paarmann,
Tobias Paczian,
B. Parrello,
G. Pusch,
D. Rodionov,
Xinghua Shi,
O. Vassieva,
Veronika Vonstein,
O. Zagnitko,
Fangfang Xia,
Jenifer Zinner,
R. Overbeek,
Rick L. Stevens
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6 |
2006 |
6
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Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis
18 auth.
K. H. Brown,
Kimberly P. Dobrinski,
Arthur S. Lee,
O. Gokcumen,
Ryan E. Mills,
Xinghua Shi,
W. Chong,
J. Y. Chen,
Paulo Yoo,
S. David,
...
Samuel M. Peterson,
T. Raj,
K. Choy,
B. Stranger,
Robin E. Williamson,
L. Zon,
J. Freeman,
Charles Lee
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6 |
2011 |
6
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A deep auto-encoder model for gene expression prediction
Rui Xie,
Jia Wen,
Andrew Quitadamo,
Jianlin Cheng,
Xinghua Shi
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6 |
2017 |
6
🐢
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DeepDSC: A Deep Learning Method to Predict Drug Sensitivity of Cancer Cell Lines
7 auth.
Min Li,
Yake Wang,
Ruiqing Zheng,
Xinghua Shi,
Yaohang Li,
Fangxiang Wu,
...
Jianxin Wang
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6 |
2021 |
6
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Effects of short indels on protein structure and function in human genomes
Maoxuan Lin,
Sarah Whitmire,
J. Chen,
Alvin Farrel,
Xinghua Shi,
Jun-tao Guo
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6 |
2017 |
6
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An overview of human genetic privacy
Xinghua Shi,
Xintao Wu
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6 |
2017 |
6
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