|
🐜
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Recovering Gene Interactions from Single-Cell Data Using Data Diffusion
15 auth.
D. V. Dijk,
Roshan Sharma,
J. Nainys,
Kristina M. Yim,
Pooja Kathail,
Ambrose J. Carr,
Cassandra Burdziak,
Kevin R. Moon,
Christine L. Chaffer,
D. Pattabiraman,
...
Brian Bierie,
L. Mazutis,
Guy Wolf,
Smita Krishnaswamy,
D. Pe’er
|
10 |
2018 |
10
🐜
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|
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A gene-environment induced epigenetic program initiates tumorigenesis
20 auth.
Direna Alonso-Curbelo,
Yu-jui Ho,
Cassandra Burdziak,
J. Maag,
John P. Morris,
R. Chandwani,
Hsuan-An Chen,
Kaloyan M. Tsanov,
Francisco M. Barriga,
W. Luan,
...
Nilgun Tasdemir,
Geulah Livshits,
E. Azizi,
Jaeyoung Chun,
J. Wilkinson,
L. Mazutis,
S. Leach,
R. Koche,
D. Pe’er,
S. Lowe
|
7 |
2021 |
7
🐜
|
|
🦁
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Epigenetic plasticity cooperates with cell-cell interactions to direct pancreatic tumorigenesis
25 auth.
Cassandra Burdziak,
Direna Alonso-Curbelo,
T. Walle,
J. Reyes,
Francisco M. Barriga,
D. Haviv,
Yubin Xie,
Zhen Zhao,
Chujun Julia Zhao,
Hsuan-An Chen,
O. Chaudhary,
I. Masilionis,
Z. Choo,
Vianne R. Gao,
W. Luan,
...
Alexandra N. Wuest,
Yu-jui Ho,
Yuhong Wei,
D. Quail,
R. Koche,
L. Mazutis,
R. Chaligné,
T. Nawy,
S. Lowe,
D. Pe’er
|
6 |
2023 |
6
🦁
|
|
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Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy
14 auth.
P. Bachireddy,
E. Azizi,
Cassandra Burdziak,
Vinhkhang N. Nguyen,
Christina S. Ennis,
Z. Choo,
Shuqiang Li,
K. Livak,
D. Neuberg,
R. Soiffer,
...
J. Ritz,
E. Alyea,
D. Pe’er,
Catherine J. Wu
|
4 |
2020 |
4
🐜
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|
🐜
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Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy.
22 auth.
P. Bachireddy,
E. Azizi,
Cassandra Burdziak,
Vinhkhang N. Nguyen,
Christina S. Ennis,
K. Maurer,
Cameron Y Park,
Z. Choo,
Shuqiang Li,
S. Gohil,
...
Neil Ruthen,
Zhongqi Ge,
Derin B Keskin,
Nicoletta Cieri,
K. Livak,
Haesook T. Kim,
D. Neuberg,
R. Soiffer,
Jerome Ritz,
E. Alyea,
D. Pe’er,
Catherine J. Wu
|
4 |
2021 |
4
🐜
|
|
🦁
|
A Nonparametric Multi-view Model for Estimating Cell Type-Specific Gene Regulatory Networks
Cassandra Burdziak,
E. Azizi,
Sandhya Prabhakaran,
D. Pe’er
|
3 |
2019 |
3
🦁
|
|
🐜
|
A Novel Approach for Pancreas Transcriptomics Reveals the Cellular Landscape in Homeostasis and Acute Pancreatitis.
13 auth.
Katherine J. Aney,
Woo-Jeong Jeong,
Andres F. Vallejo,
Cassandra Burdziak,
Ethan Chen,
Austin Wang,
Pal Koak,
Kellie Wise,
Kirk Jensen,
D. Pe’er,
...
Stephanie K Dougan,
Luciano Martelotto,
Sahar Nissim
|
3 |
2024 |
3
🐜
|
|
🦁
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scKINETICS: inference of regulatory velocity with single-cell transcriptomics data
Cassandra Burdziak,
Chujun Julia Zhao,
D. Haviv,
Direna Alonso-Curbelo,
S. Lowe,
D. Pe’er
|
3 |
2023 |
3
🦁
|
|
🐜
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Progressive plasticity during colorectal cancer metastasis
39 auth.
Andrew Moorman,
Elizabeth K. Benitez,
Francesco Cambulli,
Qingwen Jiang,
Ahmed Mahmoud,
M. Lumish,
S. Hartner,
Sasha Balkaran,
J. Bermeo,
Simran Asawa,
C. Firat,
Asha Saxena,
Fan Wu,
A. Luthra,
Cassandra Burdziak,
...
Yubin Xie,
V. Sgambati,
Kathleen Luckett,
Yanyun Li,
Zhifan Yi,
I. Masilionis,
Kevin Soares,
E. Pappou,
R. Yaeger,
T. Kingham,
W. Jarnagin,
P. Paty,
M. Weiser,
L. Mazutis,
Michael D’Angelica,
J. Shia,
Julio Garcia-Aguilar,
T. Nawy,
Travis J Hollmann,
R. Chaligné,
F. Sánchez-Vega,
Roshan Sharma,
D. Pe’er,
K. Ganesh
|
2 |
2024 |
2
🐜
|
|
🐜
|
Wasserstein Wormhole: Scalable Optimal Transport Distance with Transformers
7 auth.
D. Haviv,
Russell Z. Kunes,
Thomas Dougherty,
Cassandra Burdziak,
T. Nawy,
Anna Gilbert,
...
D. Pe’er
|
2 |
2024 |
2
🐜
|
