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Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
74 auth.
Ino de Bruijn,
Ritika Kundra,
B. Mastrogiacomo,
T. Tran,
Lucas Sikina,
T. Mazor,
Xiang Li,
Angelica Ochoa,
Gaofei Zhao,
Bryan Lai,
Adam Abeshouse,
Diana Baiceanu,
Ersin Ciftci,
U. Dogrusoz,
Andrew Dufilie,
...
Ziya Erkoç,
Elena Garcia Lara,
Zhaoyuan Fu,
Benjamin E. Gross,
Charles D Haynes,
Allison P. Heath,
David M Higgins,
Prasanna Jagannathan,
Karthik Kalletla,
P. Kumari,
James Lindsay,
Aaron Lisman,
Bas Leenknegt,
Pieter Lukasse,
Divya Madala,
Ramyasree Madupuri,
P. van Nierop,
Oleguer Plantalech,
Joyce Quach,
Adam C. Resnick,
Sander Y. A. Rodenburg,
B. Satravada,
F. Schaeffer,
R. Sheridan,
Jessica Singh,
Rajat Sirohi,
S. O. Sumer,
Sjoerd van Hagen,
Avery Wang,
Manda Wilson,
Hongxin Zhang,
Kelsey Zhu,
Nicole Rusk,
Samantha Brown,
J. Lavery,
K. Panageas,
J. Rudolph,
M. LeNoue-Newton,
Jeremy L Warner,
Xindi Guo,
Haley Hunter-Zinck,
Thomas V Yu,
Shirin Pillai,
Chelsea Nichols,
Stuart M. Gardos,
J. Philip,
Genie Bpc Core Team,
Aacr Project Genie Consortium,
K. Kehl,
Gregory Riely,
D. Schrag,
Jocelyn Lee,
Michael V. Fiandalo,
S. Sweeney,
Trevor J. Pugh,
C. Sander,
E. Cerami,
Jianjiong Gao,
N. Schultz
|
7 |
2023 |
7
🐜
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|
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Genetic Ancestry Correlates with Somatic Differences in a Real-World Clinical Cancer Sequencing Cohort.
28 auth.
K. Arora,
T. Tran,
Y. Kemel,
Miika Mehine,
Ying L. Liu,
S. Nandakumar,
Shaleigh A. Smith,
A. Brannon,
I. Ostrovnaya,
Konrad H. Stopsack,
P. Razavi,
A. Safonov,
H. Rizvi,
M. Hellmann,
J. Vijai,
...
T. C. Reynolds,
J. Fagin,
Jian Carrot-Zhang,
K. Offit,
D. Solit,
M. Ladanyi,
N. Schultz,
A. Zehir,
C. Brown,
Z. Stadler,
D. Chakravarty,
C. Bandlamudi,
M. Berger
|
4 |
2022 |
4
🐜
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Automated real-world data integration improves cancer outcome prediction
96 auth.
Justin Jee,
Christopher J. Fong,
Karl Pichotta,
T. Tran,
A. Luthra,
Michele Waters,
Chenlian Fu,
M. Altoe,
Si-yang Liu,
S. Maron,
Mehnaj S. Ahmed,
Susie Kim,
Mono Pirun,
W. Chatila,
Ino de Bruijn,
...
Arfath Pasha,
Ritika Kundra,
Benjamin E. Gross,
B. Mastrogiacomo,
Tyler J. Aprati,
David Liu,
Jianjiong Gao,
M. Capelletti,
Kelly Pekala,
Lisa Loudon,
Maria A Perry,
C. Bandlamudi,
M. Donoghue,
B. Satravada,
Axel Martin,
Ronglai Shen,
Yuan Chen,
A. Brannon,
Jason Chang,
L. Braunstein,
Anyi Li,
A. Safonov,
Aaron Stonestrom,
Pablo Sánchez-Vela,
Clare Wilhelm,
M. Robson,
Howard I Scher,
Marc Ladanyi,
J. Reis-Filho,
D. Solit,
David R Jones,
Daniel Gomez,
Helena A Yu,
D. Chakravarty,
R. Yaeger,
W. Abida,
Wungki Park,
Eileen M. O’Reilly,
J. Garcia-Aguilar,
Nicholas B Socci,
F. Sánchez-Vega,
Jian Carrot-Zhang,
Peter D Stetson,
Ross L. Levine,
Charles M. Rudin,
Michael F. Berger,
Sohrab P. Shah,
D. Schrag,
P. Razavi,
Kenneth L. Kehl,
Bob T. Li,
Gregory J. Riely,
N. Schultz,
Aaron Lisman,
Gaofei Zhao,
Xiang Li,
Aarman Kohli,
Darin Moore,
Raymond Lim,
Tom Pollard,
R. Sheridan,
Avery Wang,
Calla Chennault,
Manda Wilson,
Hongxin Zhang,
Robert Pimienta,
Surya Rangavajhala,
Guru Subramanian,
Jowel Garcia,
Naveen Rachuri,
Kevin M. Boehm,
Mitchell Parker,
H. Walch,
S. Nandakumar,
J. Eichholz,
Ayush Kris,
Paolo Manca,
Xuechun Bai,
Tejiri Agbamu,
Justin U,
Xinran Bi
|
4 |
2024 |
4
🐜
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|
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The GENIE BPC NSCLC Cohort: A Real-World Repository Integrating Standardized Clinical and Genomic Data for 1,846 Patients with Non–Small Cell Lung Cancer
28 auth.
N. Choudhury,
J. Lavery,
Samantha Brown,
Ino de Bruijn,
J. Jee,
T. Tran,
H. Rizvi,
K. Arbour,
Karissa A. Whiting,
R. Shen,
M. Hellmann,
Philippe Bédard,
Celeste Yu,
N. Leighl,
M. LeNoue-Newton,
...
Christine M Micheel,
J. Warner,
M. Ginsberg,
A. Plodkowski,
J. Girshman,
P. Sawan,
Shirin Pillai,
S. Sweeney,
K. Kehl,
K. Panageas,
N. Schultz,
D. Schrag,
Gregory Riely
|
2 |
2023 |
2
🐜
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|
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Abstract 3892: Systematic generation of a clinicogenomic harmonized oncologic real-world dataset (MSK-CHORD)
35 auth.
Christopher J. Fong,
Karl Pichotta,
T. Tran,
Michele Waters,
Tom Fu,
Mono Pirun,
M. Altoe,
B. Mastrogiacomo,
A. Luthra,
Mehnaj S. Ahmed,
Arfath Pasha,
Armaan Kohli,
Raymond Lim,
Tom Pollard,
Darin Moore,
...
Benjamin E. Gross,
Avery Wang,
Calla Chennault,
Ritika Kundra,
Ramyasree Madupuri,
Ino de Bruijn,
Aaron Lisman,
W. Chatila,
S. Nandakumar,
Anika Begum,
Doori Rose,
K. Kehl,
D. Schrag,
Michael F. Berger,
Jian Carrot-Zhang,
P. Razavi,
Bob T. Li,
Peter D Stetson,
N. Schultz,
J. Jee
|
0 |
2024 |
0
🐜
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|
🦁
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Abstract 1252: AI-derived predictions improve identification of real-world cancer driver mutations
12 auth.
T. Tran,
Christopher J. Fong,
Karl Pichotta,
A. Luthra,
Ronglai Shen,
Yuan Chen,
...
Michele Waters,
Susie Kim,
Gregory J. Riely,
D. Chakravarty,
N. Schultz,
J. Jee
|
0 |
2024 |
0
🦁
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|
🐜
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Large-scale clinicogenomic models of solid tumor CNS metastasis.
20 auth.
J. Jee,
A. Luthra,
Christopher Fong,
Karl Pichotta,
T. Tran,
M. Altoe,
A. Miller,
R. Shen,
M. Berger,
F. Sánchez-Vega,
...
S. Maron,
A. Safonov,
K. Kehl,
J. Reis-Filho,
D. Schrag,
Sohrab P. Shah,
P. Razavi,
Bob T. Li,
Gregory Riely,
N. Schultz
|
0 |
2023 |
0
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