π
|
Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.
307 auth.
D. Brat,
R. Verhaak,
K. Aldape,
W. Yung,
S. Salama,
L. Cooper,
Esther Rheinbay,
C. Miller,
M. Vitucci,
O. Morozova,
A. G. Robertson,
H. Noushmehr,
P. Laird,
A. Cherniack,
Rehan Akbani,
...
J. Huse,
G. Ciriello,
L. Poisson,
J. Barnholtz-Sloan,
M. Berger,
C. Brennan,
R. Colen,
H. Colman,
A. Flanders,
C. Giannini,
Mia Grifford,
A. Iavarone,
R. Jain,
I. Joseph,
Jaegil Kim,
K. Kasaian,
T. Mikkelsen,
Bradley A. Murray,
B. O'neill,
L. Pachter,
D. Parsons,
C. Sougnez,
E. Sulman,
S. Vandenberg,
Erwin G. Van Meir,
A. von Deimling,
Hailei Zhang,
D. Crain,
Kevin R Lau,
D. Mallery,
S. Morris,
J. Paulauskis,
R. Penny,
T. Shelton,
M. Sherman,
P. Yena,
Aaron D. Black,
Jay Bowen,
Katie Dicostanzo,
J. Gastier-Foster,
K. Leraas,
T. Lichtenberg,
C. Pierson,
N. Ramirez,
Cynthia Taylor,
Stephanie Weaver,
L. Wise,
E. Zmuda,
Tanja Davidsen,
John A. Demchok,
G. Eley,
M. Ferguson,
C. Hutter,
K. R. Mills Shaw,
B. Ozenberger,
Margi Sheth,
H. Sofia,
R. Tarnuzzer,
Zhining Wang,
Liming Yang,
J. Zenklusen,
Brenda Ayala,
J. Baboud,
Sudha Chudamani,
M. Jensen,
Jia Liu,
T. Pihl,
R. Raman,
Yunhu Wan,
Ye Wu,
Adrian Ally,
J. Auman,
M. Balasundaram,
S. Balu,
S. Baylin,
R. Beroukhim,
Moiz Bootwalla,
R. Bowlby,
C. Bristow,
Denise Brooks,
Y. Butterfield,
R. Carlsen,
S. Carter,
L. Chin,
Andy Chu,
E. Chuah,
K. Cibulskis,
A. Clarke,
Simon G. Coetzee,
Noreen Dhalla,
T. Fennell,
Sheila A Fisher,
S. Gabriel,
G. Getz,
R. Gibbs,
R. Guin,
Angela Hadjipanayis,
D. Hayes,
T. Hinoue,
K. Hoadley,
R. Holt,
A. Hoyle,
S. Jefferys,
Steven J. M. Jones,
Corbin D. Jones,
R. Kucherlapati,
Phillip H. Lai,
E. Lander,
Semin Lee,
Lee T Lichtenstein,
Yussanne Ma,
D. Maglinte,
Harshad S. Mahadeshwar,
M. Marra,
Michael Mayo,
S. Meng,
M. Meyerson,
P. Mieczkowski,
Richard A. Moore,
Lisle E. Mose,
A. Mungall,
A. Pantazi,
Michael G Parfenov,
P. Park,
J. Parker,
C. Perou,
A. Protopopov,
X. Ren,
J. Roach,
Thais S Sabedot,
J. Schein,
S. Schumacher,
J. Seidman,
S. Seth,
Hui Shen,
J. Simons,
Payal Sipahimalani,
Matthew G. Soloway,
Xingzhi Song,
Huandong Sun,
B. Tabak,
Angela Tam,
Donghui Tan,
Jiabin Tang,
N. Thiessen,
T. Triche,
D. J. Van Den Berg,
Umadevi Veluvolu,
S. Waring,
D. Weisenberger,
M. Wilkerson,
Tina Wong,
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Liu Xi,
A. W. Xu,
Lixing Yang,
Travis Zack,
Jianhua Zhang,
B. A. Aksoy,
H. Arachchi,
C. Benz,
Brady Bernard,
Daniel E. Carlin,
Juok Cho,
D. Dicara,
S. Frazer,
G. Fuller,
Jianjiong Gao,
Nils Gehlenborg,
D. Haussler,
David I Heiman,
L. Iype,
A. Jacobsen,
Z. Ju,
Sol Katzman,
Hoon Kim,
T. Knijnenburg,
R. Kreisberg,
M. Lawrence,
William Lee,
Kalle Leinonen,
Pei Lin,
Shiyun Ling,
Wenbin Liu,
Yingchun Liu,
Yuexin Liu,
Yiling Lu,
G. Mills,
S. Ng,
M. Noble,
Evan O. Paull,
A. Rao,
Sheila M. Reynolds,
G. Saksena,
Zachary Sanborn,
C. Sander,
N. Schultz,
Y. ΕenbabaoΔlu,
R. Shen,
I. Shmulevich,
Rileen Sinha,
Josh M Stuart,
S. O. Sumer,
Yichao Sun,
Natalie I. Tasman,
B. Taylor,
Douglas Voet,
Nils Weinhold,
J. Weinstein,
Da Yang,
K. Yoshihara,
Siyuan Zheng,
Wei Zhang,
L. Zou,
T. Abel,
S. Sadeghi,
M. Cohen,
J. Eschbacher,
E. Hattab,
A. Raghunathan,
M. Schniederjan,
Dina Aziz,
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L. Boice,
C. Brewer,
C. Calatozzolo,
B. Campos,
C. Carlotti,
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R. Duell,
J. Elder,
Ashley Fehrenbach,
G. Finocchiaro,
W. Friedman,
J. Fulop,
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B. Hermes,
C. HeroldβMende,
C. Jungk,
A. Kendler,
N. Lehman,
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Randy Mandt,
Mary McGraw,
R. McLendon,
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Ardene Noss,
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Q. Ostrom,
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A. Potapov,
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L. Scarpace,
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Kelly Senecal,
K. Shimmel,
V. Shurkhay,
Suzanne Sifri,
Rosy Singh,
A. Sloan,
Kathy Smolenski,
S. Staugaitis,
Ruth Steele,
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A. Unterberg,
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C. Stewart,
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J. Grimsby,
Amie Radenbaugh,
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11 |
2015 |
11 π
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π’
|
Predicting cancer outcomes from histology and genomics using convolutional networks
8 auth.
Pooya Mobadersany,
Safoora Yousefi,
M. Amgad,
D. Gutman,
J. Barnholtz-Sloan,
JosΓ© E. VelΓ‘zquez Vega,
...
D. Brat,
L. Cooper
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9 |
2017 |
9 π’
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π
|
Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas
263 auth.
Adam Abeshouse,
C. Adebamowo,
S. Adebamowo,
Rehan Akbani,
Teniola Akeredolu,
Adrian Ally,
Matthew L. Anderson,
Pavana Anur,
Elizabeth L. Appelbaum,
J. Armenia,
J. Auman,
Matthew H. Bailey,
L. Baker,
M. Balasundaram,
S. Balu,
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F. Barthel,
J. Bartlett,
S. Baylin,
M. Behera,
D. Belyaev,
J. Bennett,
C. Benz,
R. Beroukhim,
M. Birrer,
T. Bocklage,
T. Bodenheimer,
L. Boice,
Moiz Bootwalla,
Jay Bowen,
R. Bowlby,
J. Boyd,
A. Brohl,
Denise Brooks,
L. Byers,
R. Carlsen,
Patricia D. Castro,
Hsiao-Wei Chen,
A. Cherniack,
F. Chibon,
L. Chin,
Juok Cho,
E. Chuah,
Sudha Chudamani,
C. Cibulskis,
L. Cooper,
L. Cope,
M. Cordes,
D. Crain,
Erin E. Curley,
Ludmila V. Danilova,
F. Dao,
I. Davis,
L. Davis,
T. DeFreitas,
K. Delman,
John A. Demchok,
G. Demetri,
Elizabeth G. Demicco,
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L. Diao,
L. Ding,
P. Disaia,
P. Dottino,
L. Doyle,
E. Drill,
M. Dubina,
J. Eschbacher,
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M. Ferguson,
S. Frazer,
C. Fronick,
Victoria Fulidou,
L. Fulton,
R. Fulton,
S. Gabriel,
Jianjiong Gao,
Qingsong Gao,
J. Gardner,
J. Gastier-Foster,
Nils Gehlenborg,
M. Gerken,
G. Getz,
A. Godwin,
Eryn M. Godwin,
E. Gordienko,
J. Grilley-Olson,
D. Gutman,
D. Gutmann,
D. Hayes,
A. Hegde,
David I Heiman,
Zachary J. Heins,
Carmen Helsel,
Austin J. Hepperla,
Kelly J. Higgins,
K. Hoadley,
Shital Hobensack,
R. Holt,
D. Hoon,
J. Hornick,
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C. Hutter,
M. Iacocca,
D. Ingram,
M. Ittmann,
L. Iype,
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Jaegil Kim,
Ritika Kundra,
Hanluen Kuo,
M. Ladanyi,
Phillip H. Lai,
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M. Lawrence,
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Sanghoon Lee,
Darlene Lee,
K. Lehmann,
K. Leraas,
J. Lester,
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T. Lichtenberg,
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Laxmi Lolla,
Yiling Lu,
Yussanne Ma,
R. Madan,
D. Maglinte,
A. Magliocco,
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A. Mungall,
K. Mungall,
Michael Nalisnik,
R. Naresh,
Yulia Newton,
M. Noble,
J. E. Novak,
Angelica Ochoa,
Narciso Olvera,
T. Owonikoko,
O. Paklina,
J. Parfitt,
J. Parker,
A. Pastore,
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R. Penny,
E. Pereira,
C. Perou,
Amy H. Perou,
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O. Potapova,
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W. Rathmell,
C. Raut,
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G. Sica,
J. Simons,
S. Singer,
Payal Sipahimalani,
Tara J. Skelly,
N. Socci,
H. Sofia,
Matthew G. Soloway,
P. Spellman,
Qiang Sun,
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Angela Tam,
Donghui Tan,
R. Tarnuzzer,
N. Thiessen,
E. Thompson,
L. Thorne,
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Keila E. Torres,
M. Rijn,
D. V. Berg,
B. V. Tine,
Umadevi Veluvolu,
R. Verhaak,
Douglas Voet,
Olga Voronina,
Yunhu Wan,
Zhining Wang,
Jing Wang,
J. Weinstein,
D. Weisenberger,
M. Wilkerson,
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Matthew A. Wyczalkowski,
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V. Yellapantula,
J. Zenklusen,
J. Zhang,
Hailei Zhang,
Hongxin Zhang,
E. Zmuda
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9 |
2017 |
9 π
|
π
|
MR imaging predictors of molecular profile and survival: multi-institutional study of the TCGA glioblastoma data set.
27 auth.
D. Gutman,
L. Cooper,
Scott N. Hwang,
C. Holder,
Jingjing Gao,
Tarun Aurora,
William D. Dunn,
L. Scarpace,
T. Mikkelsen,
R. Jain,
M. Wintermark,
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P. Raghavan,
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P. Mongkolwat,
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C. Jaffe,
R. Colen,
D. Rubin,
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A. Flanders,
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8 |
2013 |
8 π
|
π
|
T2βFLAIR Mismatch, an Imaging Biomarker for IDH and 1p/19q Status in Lower-grade Gliomas: A TCGA/TCIA Project
13 auth.
Sohil H. Patel,
L. Poisson,
D. Brat,
Yueren Zhou,
L. Cooper,
M. Snuderl,
Cheddhi J Thomas,
A. Franceschi,
B. Griffith,
A. Flanders,
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J. Golfinos,
A. Chi,
R. Jain
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8 |
2017 |
8 π
|
π
|
Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization
15 auth.
Pegah Khosravi,
Ehsan Kazemi,
Q. Zhan,
J. Malmsten,
M. Toschi,
Pantelis Zisimopoulos,
Alexandros Sigaras,
S. Lavery,
L. Cooper,
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M. Meseguer,
Z. Rosenwaks,
O. Elemento,
N. Zaninovic,
I. Hajirasouliha
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8 |
2019 |
8 π
|
π¦
|
The tumor microenvironment strongly impacts master transcriptional regulators and gene expression class of glioblastoma.
11 auth.
L. Cooper,
D. Gutman,
Candace Chisolm,
Christina Appin,
Jun Kong,
Y. Rong,
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T. KurΓ§,
Erwin G. Van Meir,
J. Saltz,
C. Moreno,
D. Brat
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7 |
2012 |
7 π¦
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π’
|
Structured crowdsourcing enables convolutional segmentation of histology images
31 auth.
M. Amgad,
H. Elfandy,
Hagar Hussein,
Lamees A. Atteya,
Mai A T. Elsebaie,
Lamia S. Abo Elnasr,
R. Sakr,
Hazem S. E. Salem,
Ahmed F. Ismail,
Anas M. Saad,
Joumana Ahmed,
Maha A. T. Elsebaie,
Mustafijur Rahman,
Inas A Ruhban,
Nada M. Elgazar,
...
Yahya Alagha,
M. Osman,
A. Alhusseiny,
Mariam M. Khalaf,
A. F. Younes,
Ali Abdulkarim,
Duaa M. Younes,
A. Gadallah,
A. Elkashash,
S. Fala,
B. Zaki,
J. Beezley,
D. Chittajallu,
David Manthey,
D. Gutman,
L. Cooper
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7 |
2019 |
7 π’
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π’
|
Predicting clinical outcomes from large scale cancer genomic profiles with deep survival models
11 auth.
Safoora Yousefi,
Fatemeh Amrollahi,
M. Amgad,
Chengliang Dong,
Joshua E. Lewis,
Congzheng Song,
...
D. Gutman,
Sameer H. Halani,
JosΓ© E. VelΓ‘zquez Vega,
D. Brat,
L. Cooper
|
7 |
2017 |
7 π’
|
π
|
Tumor-Infiltrating Lymphocytes in Glioblastoma Are Associated with Specific Genomic Alterations and Related to Transcriptional Class
19 auth.
W. C. Rutledge,
Jun Kong,
Jingjing Gao,
D. Gutman,
L. Cooper,
Christina Appin,
Yuna Park,
L. Scarpace,
T. Mikkelsen,
M. Cohen,
...
K. Aldape,
R. McLendon,
N. Lehman,
C. Miller,
M. Schniederjan,
C. Brennan,
J. Saltz,
C. Moreno,
D. Brat
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7 |
2013 |
7 π
|
π
|
The OncoPPi network of cancer-focused proteinβprotein interactions to inform biological insights and therapeutic strategies
24 auth.
Zenggang Li,
A. Ivanov,
Rina Su,
Valentina Gonzalez-Pecchi,
Q. Qi,
Songlin Liu,
P. Webber,
E. McMillan,
Lauren Rusnak,
C. Pham,
...
Xiaoqian Chen,
Xiulei Mo,
Brian Revennaugh,
Wei Zhou,
A. Marcus,
Sahar Harati,
Xiang Chen,
Margaret A. Johns,
M. White,
C. Moreno,
L. Cooper,
Yuhong Du,
F. Khuri,
H. Fu
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7 |
2017 |
7 π
|
π¦
|
PanCancer insights from The Cancer Genome Atlas: the pathologist's perspective
L. Cooper,
Elizabeth G. Demicco,
J. Saltz,
Reid T Powell,
A. Rao,
A. Lazar
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7 |
2018 |
7 π¦
|