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2016 update of the PRIDE database and its related tools
13 auth.
J. Vizcaíno,
A. Csordas,
N. del-Toro,
José A. Dianes,
J. Griss,
Ilias Lavidas,
Gerhard Mayer,
Yasset Pérez-Riverol,
F. Reisinger,
Tobias Ternent,
...
Qing-Wei Xu,
Rui Wang,
H. Hermjakob
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11 |
2015 |
11
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🐜
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The Gene Ontology resource: enriching a GOld mine
180 auth.
S. Carbon,
E. Douglass,
Benjamin M. Good,
Deepak R. Unni,
N. Harris,
C. Mungall,
Siddartha Basu,
R. Chisholm,
R. Dodson,
E. Hartline,
P. Fey,
P. Thomas,
Laurent-Philippe Albou,
Dustin Ebert,
Michael J. Kesling,
...
H. Mi,
A. Muruganujan,
Xiaosong Huang,
Tremayne Mushayahama,
Sandra A. LaBonte,
D. Siegele,
Giulia Antonazzo,
H. Attrill,
N. Brown,
P. Garapati,
Steven J. Marygold,
V. Trovisco,
G. D. Santos,
K. Falls,
C. Tabone,
Pinglei Zhou,
J. Goodman,
V. Strelets,
Jim Thurmond,
Penelope Garmiri,
Rizwan Ishtiaq,
M. Rodríguez-López,
M. Acencio,
Martin Kuiper,
A. Lægreid,
C. Logie,
R. Lovering,
B. Kramarz,
Shirin C. C. Saverimuttu,
S. M. Pinheiro,
Heather Gunn,
Renzhi Su,
Kate E. Thurlow,
M. Chibucos,
M. Giglio,
Suvarna Nadendla,
James B. Munro,
Rebecca C. Jackson,
M. Duesbury,
N. del-Toro,
B. Meldal,
K. Paneerselvam,
L. Perfetto,
P. Porras,
S. Orchard,
A. Shrivastava,
Hsin-Yu Chang,
R. Finn,
A. Mitchell,
N. Rawlings,
Lorna J. Richardson,
A. Sangrador-Vegas,
J. Blake,
K. Christie,
M. Dolan,
H. Drabkin,
D. Hill,
L. Ni,
D. Sitnikov,
M. Harris,
S. Oliver,
Kim M Rutherford,
V. Wood,
Jaqueline Hayles,
J. Bähler,
E. Bolton,
Jeffrey DePons,
M. Dwinell,
G. Hayman,
M. Kaldunski,
A. Kwitek,
S. Laulederkind,
Cody Plasterer,
M. Tutaj,
M. Vedi,
Shur-Jen Wang,
P. D’Eustachio,
L. Matthews,
J. Balhoff,
Suzi A Aleksander,
M. J. Alexander,
J. Cherry,
S. Engel,
F. Gondwe,
K. Karra,
S. Miyasato,
R. Nash,
Matt Simison,
M. Skrzypek,
S. Weng,
E. Wong,
M. Feuermann,
P. Gaudet,
A. Morgat,
E. Bakker,
T. Berardini,
L. Reiser,
Shabari Subramaniam,
E. Huala,
C. Arighi,
A. Auchincloss,
K. Axelsen,
Ghislaine Argoud-Puy,
A. Bateman,
M. Blatter,
E. Boutet,
Emily Bowler,
L. Breuza,
A. Bridge,
R. Britto,
Hema Bye-A-Jee,
Cristina Casals-Casas,
E. Coudert,
P. Denny,
A. Estreicher,
M. Famiglietti,
G. Georghiou,
A. Gos,
N. Gruaz-Gumowski,
E. Hatton-Ellis,
C. Hulo,
A. Ignatchenko,
F. Jungo,
K. Laiho,
P. L. Mercier,
D. Lieberherr,
A. Lock,
Yvonne Lussi,
Alistair MacDougall,
M. Magrane,
M. Martin,
P. Masson,
D. Natale,
Nevila Hyka-Nouspikel,
I. Pedruzzi,
L. Pourcel,
S. Poux,
Sangya Pundir,
C. Rivoire,
Elena Speretta,
S. Sundaram,
N. Tyagi,
Kate Warner,
Rossana Zaru,
Cathy H. Wu,
A. Diehl,
J. Chan,
Christian A. Grove,
Raymond Y. N. Lee,
Hans-Michael Müller,
Daniela Raciti,
K. V. Auken,
P. Sternberg,
M. Berriman,
M. Paulini,
K. Howe,
Sibyl Gao,
Adam J. Wright,
L. Stein,
D. Howe,
S. Toro,
M. Westerfield,
P. Jaiswal,
L. Cooper,
J. Elser
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11 |
2020 |
11
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The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
35 auth.
S. Orchard,
M. Ammari,
Bruno Aranda,
L. Breuza,
Leonardo Briganti,
F. Broackes-Carter,
N. Campbell,
G. Chavali,
Carol Chen,
N. del-Toro,
M. Duesbury,
M. Dumousseau,
Eugenia Galeota,
U. Hinz,
M. Iannuccelli,
...
Sruthi Jagannathan,
R. Jiménez,
J. Khadake,
A. Lægreid,
L. Licata,
R. Lovering,
B. Meldal,
A. Melidoni,
Miladys Milagros,
Daniele Peluso,
L. Perfetto,
P. Porras,
A. Raghunath,
S. Ricard-Blum,
B. Roechert,
A. Stutz,
M. Tognolli,
K. Roey,
G. Cesareni,
H. Hermjakob
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10 |
2013 |
10
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🐜
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Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set
42 auth.
J. Khadake,
B. Meldal,
S. Panni,
D. Thorneycroft,
K. Van Roey,
S. Abbani,
L. Salwínski,
M. Pellegrini,
M. Iannuccelli,
L. Licata,
G. Cesareni,
B. Roechert,
A. Bridge,
M. Ammari,
F. McCarthy,
...
F. Broackes-Carter,
N. Campbell,
A. Melidoni,
M. Rodríguez-López,
R. Lovering,
S. Jagannathan,
C. Chen,
D. Lynn,
S. Ricard-Blum,
U. Mahadevan,
A. Raghunath,
N. del-Toro,
M. Duesbury,
M. Koch,
L. Perfetto,
A. Shrivastava,
D. Ochoa,
O. Wagih,
J. Piñero,
M. Kotlyar,
C. Pastrello,
P. Beltrão,
L. Furlong,
I. Jurisica,
H. Hermjakob,
S. Orchard,
P. Porras
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7 |
2019 |
7
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🐜
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PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets
14 auth.
Yasset Pérez-Riverol,
Qing-Wei Xu,
Rui Wang,
J. Uszkoreit,
J. Griss,
Aniel Sánchez,
F. Reisinger,
A. Csordas,
Tobias Ternent,
N. del-Toro,
...
José A. Dianes,
M. Eisenacher,
H. Hermjakob,
J. Vizcaíno
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7 |
2015 |
7
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🐜
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Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets
12 auth.
J. Griss,
Yasset Pérez-Riverol,
Steven Lewis,
D. Tabb,
José A. Dianes,
N. del-Toro,
...
Marc Rurik,
Mathias Walzer,
O. Kohlbacher,
H. Hermjakob,
Rui Wang,
J. Vizcaíno
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7 |
2016 |
7
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🐜
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Discovering and linking public omics data sets using the Omics Discovery Index
34 auth.
Yasset Pérez-Riverol,
Mingze Bai,
Felipe da Veiga Leprevost,
S. Squizzato,
Y. M. Park,
Kenneth Haug,
Adam J Carroll,
Dylan Spalding,
J. Paschall,
Mingxun Wang,
N. del-Toro,
Tobias Ternent,
Peng Zhang,
Nicola Buso,
N. Bandeira,
...
E. Deutsch,
D. Campbell,
R. Beavis,
R. Salek,
Ugis Sarkans,
R. Petryszak,
M. Keays,
E. Fahy,
Manish Sud,
S. Subramaniam,
A. Barberá,
R. Jiménez,
A. Nesvizhskii,
Susanna-Assunta Sansone,
C. Steinbeck,
R. Lopez,
J. Vizcaíno,
P. Ping,
H. Hermjakob
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7 |
2017 |
7
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🐜
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BioJS: an open source JavaScript framework for biological data visualization
18 auth.
John Gómez,
L. García,
Gustavo A. Salazar,
J. Villaveces,
S. Gore,
A. G. Castro,
M. Martin,
G. Launay,
Rafael Alcántara,
N. del-Toro,
...
M. Dumousseau,
S. Orchard,
S. Velankar,
H. Hermjakob,
Chenggong Zong,
P. Ping,
Manuel Corpas,
R. Jiménez
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6 |
2013 |
6
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🦁
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The IntAct database: efficient access to fine-grained molecular interaction data
29 auth.
N. del-Toro,
A. Shrivastava,
E. Ragueneau,
B. Meldal,
C. Combe,
E. Barrera,
L. Perfetto,
Karyn How,
Prashansa Ratan,
Gautam Shirodkar,
Odilia Lu,
Bálint Mészáros,
Xavier Watkins,
Sangya Pundir,
L. Licata,
...
M. Iannuccelli,
M. Pellegrini,
M. Martin,
S. Panni,
M. Duesbury,
Sylvain D. Vallet,
J. Rappsilber,
S. Ricard-Blum,
G. Cesareni,
L. Salwínski,
S. Orchard,
P. Porras,
Kalpana Panneerselvam,
H. Hermjakob
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6 |
2021 |
6
🦁
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🦁
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A new reference implementation of the PSICQUIC web service
11 auth.
N. del-Toro,
M. Dumousseau,
S. Orchard,
R. Jiménez,
Eugenia Galeota,
G. Launay,
...
Johannes Goll,
Karin Breuer,
K. Ono,
L. Salwínski,
H. Hermjakob
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6 |
2013 |
6
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Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes
18 auth.
B. Meldal,
Hema Bye-A-Jee,
L. Gajdos,
Zuzana Hammerová,
Aneta Horácková,
F. Melicher,
L. Perfetto,
Daniel Pokorný,
M. Rodríguez-López,
Alzbeta Türková,
...
E. Wong,
Zengyan Xie,
Elisabet Barrera Casanova,
N. del-Toro,
M. Koch,
P. Porras,
H. Hermjakob,
S. Orchard
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6 |
2018 |
6
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🐜
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Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study
13 auth.
J. Villaveces,
R. Jiménez,
P. Porras,
N. del-Toro,
M. Duesbury,
M. Dumousseau,
S. Orchard,
H. Choi,
P. Ping,
N. Zong,
...
M. Askenazi,
B. Habermann,
H. Hermjakob
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6 |
2015 |
6
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🐜
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Network expansion of genetic associations defines a pleiotropy map of human cell biology
12 auth.
Inigo Barrio-Hernandez,
J. Schwartzentruber,
A. Shrivastava,
N. del-Toro,
Qian Zhang,
Glyn Bradley,
...
H. Hermjakob,
S. Orchard,
I. Dunham,
C. Anderson,
P. Porras,
P. Beltrão
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5 |
2021 |
5
🐜
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