Ten quick tips for machine learning in computational biology
D. Chicco
|
9 |
2017 |
9
2017
|
Using graph theory to analyze biological networks
8 auth.
Georgios A. Pavlopoulos,
Maria Secrier,
Charalampos N. Moschopoulos,
Theodoros G. Soldatos,
S. Kossida,
J. Aerts,
...
Reinhard Schneider,
P. Bagos
|
9 |
2011 |
9
2011
|
The Matthews correlation coefficient (MCC) is more reliable than balanced accuracy, bookmaker informedness, and markedness in two-class confusion matrix evaluation
D. Chicco,
Niklas Tötsch,
Giuseppe Jurman
|
9 |
2021 |
9
2021
|
Performance of genetic programming optimised Bowtie2 on genome comparison and analytic testing (GCAT) benchmarks
W. Langdon
|
8 |
2015 |
8
2015
|
PMLB: a large benchmark suite for machine learning evaluation and comparison
Randal S. Olson,
W. L. Cava,
P. Orzechowski,
R. Urbanowicz,
J. Moore
|
8 |
2017 |
8
2017
|
Visualising associations between paired ‘omics’ data sets
I. González,
K. Cao,
Melissa J. Davis,
S. Déjean
|
8 |
2012 |
8
2012
|
ChatGPT and large language models in academia: opportunities and challenges
11 auth.
Jesse G. Meyer,
R. Urbanowicz,
Patrick Martin,
K. O’Connor,
Ruowang Li,
Pei-Chen Peng,
...
T. Bright,
Nicholas P. Tatonetti,
Kyoung-Jae Won,
G. Gonzalez-Hernandez,
Jason H. Moore
|
8 |
2023 |
8
2023
|
The Matthews correlation coefficient (MCC) should replace the ROC AUC as the standard metric for assessing binary classification
D. Chicco,
Giuseppe Jurman
|
7 |
2023 |
7
2023
|
A survey of visualization tools for biological network analysis
Georgios A. Pavlopoulos,
Anna-Lynn Wegener,
Reinhard Schneider
|
7 |
2008 |
7
2008
|
Visualizing genomic information across chromosomes with PhenoGram
Daniel Wolfe,
S. Dudek,
M. Ritchie,
S. Pendergrass
|
7 |
2013 |
7
2013
|
GAMETES: a fast, direct algorithm for generating pure, strict, epistatic models with random architectures
R. Urbanowicz,
Jeff Kiralis,
Nicholas A. Sinnott-Armstrong,
Tamra Heberling,
Jonathan M. Fisher,
J. Moore
|
7 |
2012 |
7
2012
|
DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization
Sinan Erten,
G. Bebek,
R. Ewing,
Mehmet Koyutürk
|
7 |
2011 |
7
2011
|
Spatially Uniform ReliefF (SURF) for computationally-efficient filtering of gene-gene interactions
C. Greene,
N. Penrod,
Jeff Kiralis,
J. Moore
|
7 |
2009 |
7
2009
|
