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Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome
70 auth. Kayoko Yamada, Jun-Man Lim, Joseph M. Dale, Huaming Chen, P. Shinn, C. Palm, Audrey M. Southwick, Hank Wu, Christopher J. Kim, M. Nguyen, Paul K. Pham, Rosa Cheuk, George Karlin-Newmann, Shirley X. Liu, Bao Lam, ... H. Sakano, Troy Wu, Guixia Yu, Molly Miranda, H. Quach, M. Tripp, Charlie Chang, J. M. Lee, Mitsue J. Toriumi, Marie M H Chan, C. Tang, C. Onodera, Justine M Deng, Kenji Akiyama, Yasser Ansari, T. Arakawa, Jenny K Banh, Fumika Banno, Leah Bowser, Shelise Y. Brooks, Piero Carninci, Qimin Chao, Nathan Choy, A. Enju, A. D. Goldsmith, M. Gurjal, Nancy F. Hansen, Y. Hayashizaki, Chanda Johnson-Hopson, Vickie Hsuan, K. Iida, Meagan Karnes, Shehnaz Khan, Eric Koesema, Junko Ishida, P. Jiang, Ted Jones, J. Kawai, Asako Kamiya, Cristina C Meyers, Maiko Nakajima, M. Narusaka, M. Seki, Tetsuya Sakurai, Masakazu Satou, R. Tamse, M. Vaysberg, Erika K Wallender, Cecilia Wong, Y. Yamamura, Shiaulou Yuan, K. Shinozaki, Ronald W. Davis, A. Theologis, J. Ecker
Functional analysis of a genome requires accurate gene structure information and a complete gene inventory. A dual experimental strategy was used to verify and correct the initial genome sequence annotation of the reference plant Arabidopsis. Sequen…
Functional analysis of a genome requires accurate gene structure information and a complete gene inventory. A dual experimental strategy was used to verify and correct the initial genome sequence annotation of the reference plant Arabidopsis. Sequencing full-length cDNAs and hybridizations using RNA populations from various tissues to a set of high-density oligonucleotide arrays spanning the entire genome allowed the accurate annotation of thousands of gene structures. We identified 5817 novel transcription units, including a substantial amount of antisense gene transcription, and 40 genes within the genetically defined centromeres. This approach resulted in completion of ∼30% of the Arabidopsis ORFeome as a resource for global functional experimentation of the plant proteome.
Published in Science
117
9 2003